Cargando…

Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses

[Image: see text] Active data screening is an integral part of many scientific activities, and mobile technologies have greatly facilitated this process by minimizing the reliance on large hardware instrumentation. In order to meet with the increasingly growing field of metabolomics and heavy worklo...

Descripción completa

Detalles Bibliográficos
Autores principales: Montenegro-Burke, J. Rafael, Phommavongsay, Thiery, Aisporna, Aries E., Huan, Tao, Rinehart, Duane, Forsberg, Erica, Poole, Farris L., Thorgersen, Michael P., Adams, Michael W. W., Krantz, Gregory, Fields, Matthew W., Northen, Trent R., Robbins, Paul D., Niedernhofer, Laura J., Lairson, Luke, Benton, H. Paul, Siuzdak, Gary
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2016
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054939/
https://www.ncbi.nlm.nih.gov/pubmed/27560777
http://dx.doi.org/10.1021/acs.analchem.6b02676
_version_ 1782458691611525120
author Montenegro-Burke, J. Rafael
Phommavongsay, Thiery
Aisporna, Aries E.
Huan, Tao
Rinehart, Duane
Forsberg, Erica
Poole, Farris L.
Thorgersen, Michael P.
Adams, Michael W. W.
Krantz, Gregory
Fields, Matthew W.
Northen, Trent R.
Robbins, Paul D.
Niedernhofer, Laura J.
Lairson, Luke
Benton, H. Paul
Siuzdak, Gary
author_facet Montenegro-Burke, J. Rafael
Phommavongsay, Thiery
Aisporna, Aries E.
Huan, Tao
Rinehart, Duane
Forsberg, Erica
Poole, Farris L.
Thorgersen, Michael P.
Adams, Michael W. W.
Krantz, Gregory
Fields, Matthew W.
Northen, Trent R.
Robbins, Paul D.
Niedernhofer, Laura J.
Lairson, Luke
Benton, H. Paul
Siuzdak, Gary
author_sort Montenegro-Burke, J. Rafael
collection PubMed
description [Image: see text] Active data screening is an integral part of many scientific activities, and mobile technologies have greatly facilitated this process by minimizing the reliance on large hardware instrumentation. In order to meet with the increasingly growing field of metabolomics and heavy workload of data processing, we designed the first remote metabolomic data screening platform for mobile devices. Two mobile applications (apps), XCMS Mobile and METLIN Mobile, facilitate access to XCMS and METLIN, which are the most important components in the computer-based XCMS Online platforms. These mobile apps allow for the visualization and analysis of metabolic data throughout the entire analytical process. Specifically, XCMS Mobile and METLIN Mobile provide the capabilities for remote monitoring of data processing, real time notifications for the data processing, visualization and interactive analysis of processed data (e.g., cloud plots, principle component analysis, box-plots, extracted ion chromatograms, and hierarchical cluster analysis), and database searching for metabolite identification. These apps, available on Apple iOS and Google Android operating systems, allow for the migration of metabolomic research onto mobile devices for better accessibility beyond direct instrument operation. The utility of XCMS Mobile and METLIN Mobile functionalities was developed and is demonstrated here through the metabolomic LC-MS analyses of stem cells, colon cancer, aging, and bacterial metabolism.
format Online
Article
Text
id pubmed-5054939
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-50549392017-08-25 Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses Montenegro-Burke, J. Rafael Phommavongsay, Thiery Aisporna, Aries E. Huan, Tao Rinehart, Duane Forsberg, Erica Poole, Farris L. Thorgersen, Michael P. Adams, Michael W. W. Krantz, Gregory Fields, Matthew W. Northen, Trent R. Robbins, Paul D. Niedernhofer, Laura J. Lairson, Luke Benton, H. Paul Siuzdak, Gary Anal Chem [Image: see text] Active data screening is an integral part of many scientific activities, and mobile technologies have greatly facilitated this process by minimizing the reliance on large hardware instrumentation. In order to meet with the increasingly growing field of metabolomics and heavy workload of data processing, we designed the first remote metabolomic data screening platform for mobile devices. Two mobile applications (apps), XCMS Mobile and METLIN Mobile, facilitate access to XCMS and METLIN, which are the most important components in the computer-based XCMS Online platforms. These mobile apps allow for the visualization and analysis of metabolic data throughout the entire analytical process. Specifically, XCMS Mobile and METLIN Mobile provide the capabilities for remote monitoring of data processing, real time notifications for the data processing, visualization and interactive analysis of processed data (e.g., cloud plots, principle component analysis, box-plots, extracted ion chromatograms, and hierarchical cluster analysis), and database searching for metabolite identification. These apps, available on Apple iOS and Google Android operating systems, allow for the migration of metabolomic research onto mobile devices for better accessibility beyond direct instrument operation. The utility of XCMS Mobile and METLIN Mobile functionalities was developed and is demonstrated here through the metabolomic LC-MS analyses of stem cells, colon cancer, aging, and bacterial metabolism. American Chemical Society 2016-08-25 2016-10-04 /pmc/articles/PMC5054939/ /pubmed/27560777 http://dx.doi.org/10.1021/acs.analchem.6b02676 Text en Copyright © 2016 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Montenegro-Burke, J. Rafael
Phommavongsay, Thiery
Aisporna, Aries E.
Huan, Tao
Rinehart, Duane
Forsberg, Erica
Poole, Farris L.
Thorgersen, Michael P.
Adams, Michael W. W.
Krantz, Gregory
Fields, Matthew W.
Northen, Trent R.
Robbins, Paul D.
Niedernhofer, Laura J.
Lairson, Luke
Benton, H. Paul
Siuzdak, Gary
Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses
title Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses
title_full Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses
title_fullStr Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses
title_full_unstemmed Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses
title_short Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses
title_sort smartphone analytics: mobilizing the lab into the cloud for omic-scale analyses
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054939/
https://www.ncbi.nlm.nih.gov/pubmed/27560777
http://dx.doi.org/10.1021/acs.analchem.6b02676
work_keys_str_mv AT montenegroburkejrafael smartphoneanalyticsmobilizingthelabintothecloudforomicscaleanalyses
AT phommavongsaythiery smartphoneanalyticsmobilizingthelabintothecloudforomicscaleanalyses
AT aispornaariese smartphoneanalyticsmobilizingthelabintothecloudforomicscaleanalyses
AT huantao smartphoneanalyticsmobilizingthelabintothecloudforomicscaleanalyses
AT rinehartduane smartphoneanalyticsmobilizingthelabintothecloudforomicscaleanalyses
AT forsbergerica smartphoneanalyticsmobilizingthelabintothecloudforomicscaleanalyses
AT poolefarrisl smartphoneanalyticsmobilizingthelabintothecloudforomicscaleanalyses
AT thorgersenmichaelp smartphoneanalyticsmobilizingthelabintothecloudforomicscaleanalyses
AT adamsmichaelww smartphoneanalyticsmobilizingthelabintothecloudforomicscaleanalyses
AT krantzgregory smartphoneanalyticsmobilizingthelabintothecloudforomicscaleanalyses
AT fieldsmattheww smartphoneanalyticsmobilizingthelabintothecloudforomicscaleanalyses
AT northentrentr smartphoneanalyticsmobilizingthelabintothecloudforomicscaleanalyses
AT robbinspauld smartphoneanalyticsmobilizingthelabintothecloudforomicscaleanalyses
AT niedernhoferlauraj smartphoneanalyticsmobilizingthelabintothecloudforomicscaleanalyses
AT lairsonluke smartphoneanalyticsmobilizingthelabintothecloudforomicscaleanalyses
AT bentonhpaul smartphoneanalyticsmobilizingthelabintothecloudforomicscaleanalyses
AT siuzdakgary smartphoneanalyticsmobilizingthelabintothecloudforomicscaleanalyses