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Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses
[Image: see text] Active data screening is an integral part of many scientific activities, and mobile technologies have greatly facilitated this process by minimizing the reliance on large hardware instrumentation. In order to meet with the increasingly growing field of metabolomics and heavy worklo...
Autores principales: | , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical
Society
2016
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054939/ https://www.ncbi.nlm.nih.gov/pubmed/27560777 http://dx.doi.org/10.1021/acs.analchem.6b02676 |
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author | Montenegro-Burke, J. Rafael Phommavongsay, Thiery Aisporna, Aries E. Huan, Tao Rinehart, Duane Forsberg, Erica Poole, Farris L. Thorgersen, Michael P. Adams, Michael W. W. Krantz, Gregory Fields, Matthew W. Northen, Trent R. Robbins, Paul D. Niedernhofer, Laura J. Lairson, Luke Benton, H. Paul Siuzdak, Gary |
author_facet | Montenegro-Burke, J. Rafael Phommavongsay, Thiery Aisporna, Aries E. Huan, Tao Rinehart, Duane Forsberg, Erica Poole, Farris L. Thorgersen, Michael P. Adams, Michael W. W. Krantz, Gregory Fields, Matthew W. Northen, Trent R. Robbins, Paul D. Niedernhofer, Laura J. Lairson, Luke Benton, H. Paul Siuzdak, Gary |
author_sort | Montenegro-Burke, J. Rafael |
collection | PubMed |
description | [Image: see text] Active data screening is an integral part of many scientific activities, and mobile technologies have greatly facilitated this process by minimizing the reliance on large hardware instrumentation. In order to meet with the increasingly growing field of metabolomics and heavy workload of data processing, we designed the first remote metabolomic data screening platform for mobile devices. Two mobile applications (apps), XCMS Mobile and METLIN Mobile, facilitate access to XCMS and METLIN, which are the most important components in the computer-based XCMS Online platforms. These mobile apps allow for the visualization and analysis of metabolic data throughout the entire analytical process. Specifically, XCMS Mobile and METLIN Mobile provide the capabilities for remote monitoring of data processing, real time notifications for the data processing, visualization and interactive analysis of processed data (e.g., cloud plots, principle component analysis, box-plots, extracted ion chromatograms, and hierarchical cluster analysis), and database searching for metabolite identification. These apps, available on Apple iOS and Google Android operating systems, allow for the migration of metabolomic research onto mobile devices for better accessibility beyond direct instrument operation. The utility of XCMS Mobile and METLIN Mobile functionalities was developed and is demonstrated here through the metabolomic LC-MS analyses of stem cells, colon cancer, aging, and bacterial metabolism. |
format | Online Article Text |
id | pubmed-5054939 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | American
Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-50549392017-08-25 Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses Montenegro-Burke, J. Rafael Phommavongsay, Thiery Aisporna, Aries E. Huan, Tao Rinehart, Duane Forsberg, Erica Poole, Farris L. Thorgersen, Michael P. Adams, Michael W. W. Krantz, Gregory Fields, Matthew W. Northen, Trent R. Robbins, Paul D. Niedernhofer, Laura J. Lairson, Luke Benton, H. Paul Siuzdak, Gary Anal Chem [Image: see text] Active data screening is an integral part of many scientific activities, and mobile technologies have greatly facilitated this process by minimizing the reliance on large hardware instrumentation. In order to meet with the increasingly growing field of metabolomics and heavy workload of data processing, we designed the first remote metabolomic data screening platform for mobile devices. Two mobile applications (apps), XCMS Mobile and METLIN Mobile, facilitate access to XCMS and METLIN, which are the most important components in the computer-based XCMS Online platforms. These mobile apps allow for the visualization and analysis of metabolic data throughout the entire analytical process. Specifically, XCMS Mobile and METLIN Mobile provide the capabilities for remote monitoring of data processing, real time notifications for the data processing, visualization and interactive analysis of processed data (e.g., cloud plots, principle component analysis, box-plots, extracted ion chromatograms, and hierarchical cluster analysis), and database searching for metabolite identification. These apps, available on Apple iOS and Google Android operating systems, allow for the migration of metabolomic research onto mobile devices for better accessibility beyond direct instrument operation. The utility of XCMS Mobile and METLIN Mobile functionalities was developed and is demonstrated here through the metabolomic LC-MS analyses of stem cells, colon cancer, aging, and bacterial metabolism. American Chemical Society 2016-08-25 2016-10-04 /pmc/articles/PMC5054939/ /pubmed/27560777 http://dx.doi.org/10.1021/acs.analchem.6b02676 Text en Copyright © 2016 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Montenegro-Burke, J. Rafael Phommavongsay, Thiery Aisporna, Aries E. Huan, Tao Rinehart, Duane Forsberg, Erica Poole, Farris L. Thorgersen, Michael P. Adams, Michael W. W. Krantz, Gregory Fields, Matthew W. Northen, Trent R. Robbins, Paul D. Niedernhofer, Laura J. Lairson, Luke Benton, H. Paul Siuzdak, Gary Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses |
title | Smartphone Analytics: Mobilizing the Lab into the
Cloud for Omic-Scale Analyses |
title_full | Smartphone Analytics: Mobilizing the Lab into the
Cloud for Omic-Scale Analyses |
title_fullStr | Smartphone Analytics: Mobilizing the Lab into the
Cloud for Omic-Scale Analyses |
title_full_unstemmed | Smartphone Analytics: Mobilizing the Lab into the
Cloud for Omic-Scale Analyses |
title_short | Smartphone Analytics: Mobilizing the Lab into the
Cloud for Omic-Scale Analyses |
title_sort | smartphone analytics: mobilizing the lab into the
cloud for omic-scale analyses |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054939/ https://www.ncbi.nlm.nih.gov/pubmed/27560777 http://dx.doi.org/10.1021/acs.analchem.6b02676 |
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