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Testing Modeling Assumptions in the West Africa Ebola Outbreak

The Ebola virus in West Africa has infected almost 30,000 and killed over 11,000 people. Recent models of Ebola Virus Disease (EVD) have often made assumptions about how the disease spreads, such as uniform transmissibility and homogeneous mixing within a population. In this paper, we test whether t...

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Autores principales: Burghardt, Keith, Verzijl, Christopher, Huang, Junming, Ingram, Matthew, Song, Binyang, Hasne, Marie-Pierre
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5056384/
https://www.ncbi.nlm.nih.gov/pubmed/27721505
http://dx.doi.org/10.1038/srep34598
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author Burghardt, Keith
Verzijl, Christopher
Huang, Junming
Ingram, Matthew
Song, Binyang
Hasne, Marie-Pierre
author_facet Burghardt, Keith
Verzijl, Christopher
Huang, Junming
Ingram, Matthew
Song, Binyang
Hasne, Marie-Pierre
author_sort Burghardt, Keith
collection PubMed
description The Ebola virus in West Africa has infected almost 30,000 and killed over 11,000 people. Recent models of Ebola Virus Disease (EVD) have often made assumptions about how the disease spreads, such as uniform transmissibility and homogeneous mixing within a population. In this paper, we test whether these assumptions are necessarily correct, and offer simple solutions that may improve disease model accuracy. First, we use data and models of West African migration to show that EVD does not homogeneously mix, but spreads in a predictable manner. Next, we estimate the initial growth rate of EVD within country administrative divisions and find that it significantly decreases with population density. Finally, we test whether EVD strains have uniform transmissibility through a novel statistical test, and find that certain strains appear more often than expected by chance.
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spelling pubmed-50563842016-10-19 Testing Modeling Assumptions in the West Africa Ebola Outbreak Burghardt, Keith Verzijl, Christopher Huang, Junming Ingram, Matthew Song, Binyang Hasne, Marie-Pierre Sci Rep Article The Ebola virus in West Africa has infected almost 30,000 and killed over 11,000 people. Recent models of Ebola Virus Disease (EVD) have often made assumptions about how the disease spreads, such as uniform transmissibility and homogeneous mixing within a population. In this paper, we test whether these assumptions are necessarily correct, and offer simple solutions that may improve disease model accuracy. First, we use data and models of West African migration to show that EVD does not homogeneously mix, but spreads in a predictable manner. Next, we estimate the initial growth rate of EVD within country administrative divisions and find that it significantly decreases with population density. Finally, we test whether EVD strains have uniform transmissibility through a novel statistical test, and find that certain strains appear more often than expected by chance. Nature Publishing Group 2016-10-10 /pmc/articles/PMC5056384/ /pubmed/27721505 http://dx.doi.org/10.1038/srep34598 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Burghardt, Keith
Verzijl, Christopher
Huang, Junming
Ingram, Matthew
Song, Binyang
Hasne, Marie-Pierre
Testing Modeling Assumptions in the West Africa Ebola Outbreak
title Testing Modeling Assumptions in the West Africa Ebola Outbreak
title_full Testing Modeling Assumptions in the West Africa Ebola Outbreak
title_fullStr Testing Modeling Assumptions in the West Africa Ebola Outbreak
title_full_unstemmed Testing Modeling Assumptions in the West Africa Ebola Outbreak
title_short Testing Modeling Assumptions in the West Africa Ebola Outbreak
title_sort testing modeling assumptions in the west africa ebola outbreak
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5056384/
https://www.ncbi.nlm.nih.gov/pubmed/27721505
http://dx.doi.org/10.1038/srep34598
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