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MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources

Here we introduce a MIxS extension to facilitate the recording and cataloguing of metadata from samples related to hydrocarbon resources. The proposed MIxS-HCR package incorporates the core features of the MIxS standard for marker gene (MIMARKS) and metagenomic (MIMS) sequences along with a hydrocar...

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Autores principales: Tsesmetzis, Nicolas, Yilmaz, Pelin, Marks, Peter C., Kyrpides, Nikos C., Head, Ian M., Lomans, Bart P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5059931/
https://www.ncbi.nlm.nih.gov/pubmed/27777648
http://dx.doi.org/10.1186/s40793-016-0203-5
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author Tsesmetzis, Nicolas
Yilmaz, Pelin
Marks, Peter C.
Kyrpides, Nikos C.
Head, Ian M.
Lomans, Bart P.
author_facet Tsesmetzis, Nicolas
Yilmaz, Pelin
Marks, Peter C.
Kyrpides, Nikos C.
Head, Ian M.
Lomans, Bart P.
author_sort Tsesmetzis, Nicolas
collection PubMed
description Here we introduce a MIxS extension to facilitate the recording and cataloguing of metadata from samples related to hydrocarbon resources. The proposed MIxS-HCR package incorporates the core features of the MIxS standard for marker gene (MIMARKS) and metagenomic (MIMS) sequences along with a hydrocarbon resources customized environmental package. Adoption of the MIxS-HCR standard will enable the comparison and better contextualization of investigations related to hydrocarbon rich environments. The insights from such standardized way of reporting could be highly beneficial for the successful development and optimization of hydrocarbon recovery processes and management of microbiological issues in petroleum production systems. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-016-0203-5) contains supplementary material, which is available to authorized users.
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spelling pubmed-50599312016-10-24 MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources Tsesmetzis, Nicolas Yilmaz, Pelin Marks, Peter C. Kyrpides, Nikos C. Head, Ian M. Lomans, Bart P. Stand Genomic Sci Commentary Here we introduce a MIxS extension to facilitate the recording and cataloguing of metadata from samples related to hydrocarbon resources. The proposed MIxS-HCR package incorporates the core features of the MIxS standard for marker gene (MIMARKS) and metagenomic (MIMS) sequences along with a hydrocarbon resources customized environmental package. Adoption of the MIxS-HCR standard will enable the comparison and better contextualization of investigations related to hydrocarbon rich environments. The insights from such standardized way of reporting could be highly beneficial for the successful development and optimization of hydrocarbon recovery processes and management of microbiological issues in petroleum production systems. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-016-0203-5) contains supplementary material, which is available to authorized users. BioMed Central 2016-10-12 /pmc/articles/PMC5059931/ /pubmed/27777648 http://dx.doi.org/10.1186/s40793-016-0203-5 Text en © The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Commentary
Tsesmetzis, Nicolas
Yilmaz, Pelin
Marks, Peter C.
Kyrpides, Nikos C.
Head, Ian M.
Lomans, Bart P.
MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
title MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
title_full MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
title_fullStr MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
title_full_unstemmed MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
title_short MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
title_sort mixs-hcr: a mixs extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5059931/
https://www.ncbi.nlm.nih.gov/pubmed/27777648
http://dx.doi.org/10.1186/s40793-016-0203-5
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