Cargando…

ODMSummary: A Tool for Automatic Structured Comparison of Multiple Medical Forms Based on Semantic Annotation with the Unified Medical Language System

INTRODUCTION: Medical documentation is applied in various settings including patient care and clinical research. Since procedures of medical documentation are heterogeneous and developed further, secondary use of medical data is complicated. Development of medical forms, merging of data from differe...

Descripción completa

Detalles Bibliográficos
Autores principales: Storck, Michael, Krumm, Rainer, Dugas, Martin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5063379/
https://www.ncbi.nlm.nih.gov/pubmed/27736972
http://dx.doi.org/10.1371/journal.pone.0164569
_version_ 1782459963179794432
author Storck, Michael
Krumm, Rainer
Dugas, Martin
author_facet Storck, Michael
Krumm, Rainer
Dugas, Martin
author_sort Storck, Michael
collection PubMed
description INTRODUCTION: Medical documentation is applied in various settings including patient care and clinical research. Since procedures of medical documentation are heterogeneous and developed further, secondary use of medical data is complicated. Development of medical forms, merging of data from different sources and meta-analyses of different data sets are currently a predominantly manual process and therefore difficult and cumbersome. Available applications to automate these processes are limited. In particular, tools to compare multiple documentation forms are missing. The objective of this work is to design, implement and evaluate the new system ODMSummary for comparison of multiple forms with a high number of semantically annotated data elements and a high level of usability. METHODS: System requirements are the capability to summarize and compare a set of forms, enable to estimate the documentation effort, track changes in different versions of forms and find comparable items in different forms. Forms are provided in Operational Data Model format with semantic annotations from the Unified Medical Language System. 12 medical experts were invited to participate in a 3-phase evaluation of the tool regarding usability. RESULTS: ODMSummary (available at https://odmtoolbox.uni-muenster.de/summary/summary.html) provides a structured overview of multiple forms and their documentation fields. This comparison enables medical experts to assess multiple forms or whole datasets for secondary use. System usability was optimized based on expert feedback. DISCUSSION: The evaluation demonstrates that feedback from domain experts is needed to identify usability issues. In conclusion, this work shows that automatic comparison of multiple forms is feasible and the results are usable for medical experts.
format Online
Article
Text
id pubmed-5063379
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-50633792016-11-04 ODMSummary: A Tool for Automatic Structured Comparison of Multiple Medical Forms Based on Semantic Annotation with the Unified Medical Language System Storck, Michael Krumm, Rainer Dugas, Martin PLoS One Research Article INTRODUCTION: Medical documentation is applied in various settings including patient care and clinical research. Since procedures of medical documentation are heterogeneous and developed further, secondary use of medical data is complicated. Development of medical forms, merging of data from different sources and meta-analyses of different data sets are currently a predominantly manual process and therefore difficult and cumbersome. Available applications to automate these processes are limited. In particular, tools to compare multiple documentation forms are missing. The objective of this work is to design, implement and evaluate the new system ODMSummary for comparison of multiple forms with a high number of semantically annotated data elements and a high level of usability. METHODS: System requirements are the capability to summarize and compare a set of forms, enable to estimate the documentation effort, track changes in different versions of forms and find comparable items in different forms. Forms are provided in Operational Data Model format with semantic annotations from the Unified Medical Language System. 12 medical experts were invited to participate in a 3-phase evaluation of the tool regarding usability. RESULTS: ODMSummary (available at https://odmtoolbox.uni-muenster.de/summary/summary.html) provides a structured overview of multiple forms and their documentation fields. This comparison enables medical experts to assess multiple forms or whole datasets for secondary use. System usability was optimized based on expert feedback. DISCUSSION: The evaluation demonstrates that feedback from domain experts is needed to identify usability issues. In conclusion, this work shows that automatic comparison of multiple forms is feasible and the results are usable for medical experts. Public Library of Science 2016-10-13 /pmc/articles/PMC5063379/ /pubmed/27736972 http://dx.doi.org/10.1371/journal.pone.0164569 Text en © 2016 Storck et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Storck, Michael
Krumm, Rainer
Dugas, Martin
ODMSummary: A Tool for Automatic Structured Comparison of Multiple Medical Forms Based on Semantic Annotation with the Unified Medical Language System
title ODMSummary: A Tool for Automatic Structured Comparison of Multiple Medical Forms Based on Semantic Annotation with the Unified Medical Language System
title_full ODMSummary: A Tool for Automatic Structured Comparison of Multiple Medical Forms Based on Semantic Annotation with the Unified Medical Language System
title_fullStr ODMSummary: A Tool for Automatic Structured Comparison of Multiple Medical Forms Based on Semantic Annotation with the Unified Medical Language System
title_full_unstemmed ODMSummary: A Tool for Automatic Structured Comparison of Multiple Medical Forms Based on Semantic Annotation with the Unified Medical Language System
title_short ODMSummary: A Tool for Automatic Structured Comparison of Multiple Medical Forms Based on Semantic Annotation with the Unified Medical Language System
title_sort odmsummary: a tool for automatic structured comparison of multiple medical forms based on semantic annotation with the unified medical language system
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5063379/
https://www.ncbi.nlm.nih.gov/pubmed/27736972
http://dx.doi.org/10.1371/journal.pone.0164569
work_keys_str_mv AT storckmichael odmsummaryatoolforautomaticstructuredcomparisonofmultiplemedicalformsbasedonsemanticannotationwiththeunifiedmedicallanguagesystem
AT krummrainer odmsummaryatoolforautomaticstructuredcomparisonofmultiplemedicalformsbasedonsemanticannotationwiththeunifiedmedicallanguagesystem
AT dugasmartin odmsummaryatoolforautomaticstructuredcomparisonofmultiplemedicalformsbasedonsemanticannotationwiththeunifiedmedicallanguagesystem