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Mitogenomes from type specimens, a genotyping tool for morphologically simple species: ten genomes of agar-producing red algae
DNA sequences from type specimens provide independent, objective characters that enhance the value of type specimens and permit the correct application of species names to phylogenetic clades and specimens. We provide mitochondrial genomes (mitogenomes) from archival type specimens of ten species in...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5064358/ https://www.ncbi.nlm.nih.gov/pubmed/27739454 http://dx.doi.org/10.1038/srep35337 |
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author | Boo, Ga Hun Hughey, Jeffery R. Miller, Kathy Ann Boo, Sung Min |
author_facet | Boo, Ga Hun Hughey, Jeffery R. Miller, Kathy Ann Boo, Sung Min |
author_sort | Boo, Ga Hun |
collection | PubMed |
description | DNA sequences from type specimens provide independent, objective characters that enhance the value of type specimens and permit the correct application of species names to phylogenetic clades and specimens. We provide mitochondrial genomes (mitogenomes) from archival type specimens of ten species in agar-producing red algal genera Gelidium and Pterocladiella. The genomes contain 43–44 genes, ranging in size from 24,910 to 24,970 bp with highly conserved gene synteny. Low Ka/Ks ratios of apocytochrome b and cytochrome oxidase genes support their utility as markers. Phylogenies of mitogenomes and cox1+rbcL sequences clarified classification at the genus and species levels. Three species formerly in Gelidium and Pterocladia are transferred to Pterocladiella: P. media comb. nov., P. musciformis comb. nov., and P. luxurians comb. and stat. nov. Gelidium sinicola is merged with G. coulteri because they share identical cox1 and rbcL sequences. We describe a new species, Gelidium millariana sp. nov., previously identified as G. isabelae from Australia. We demonstrate that mitogenomes from type specimens provide a new tool for typifying species in the Gelidiales and that there is an urgent need for analyzing mitogenomes from type specimens of red algae and other morphologically simple organisms for insight into their nomenclature, taxonomy and evolution. |
format | Online Article Text |
id | pubmed-5064358 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-50643582016-10-26 Mitogenomes from type specimens, a genotyping tool for morphologically simple species: ten genomes of agar-producing red algae Boo, Ga Hun Hughey, Jeffery R. Miller, Kathy Ann Boo, Sung Min Sci Rep Article DNA sequences from type specimens provide independent, objective characters that enhance the value of type specimens and permit the correct application of species names to phylogenetic clades and specimens. We provide mitochondrial genomes (mitogenomes) from archival type specimens of ten species in agar-producing red algal genera Gelidium and Pterocladiella. The genomes contain 43–44 genes, ranging in size from 24,910 to 24,970 bp with highly conserved gene synteny. Low Ka/Ks ratios of apocytochrome b and cytochrome oxidase genes support their utility as markers. Phylogenies of mitogenomes and cox1+rbcL sequences clarified classification at the genus and species levels. Three species formerly in Gelidium and Pterocladia are transferred to Pterocladiella: P. media comb. nov., P. musciformis comb. nov., and P. luxurians comb. and stat. nov. Gelidium sinicola is merged with G. coulteri because they share identical cox1 and rbcL sequences. We describe a new species, Gelidium millariana sp. nov., previously identified as G. isabelae from Australia. We demonstrate that mitogenomes from type specimens provide a new tool for typifying species in the Gelidiales and that there is an urgent need for analyzing mitogenomes from type specimens of red algae and other morphologically simple organisms for insight into their nomenclature, taxonomy and evolution. Nature Publishing Group 2016-10-14 /pmc/articles/PMC5064358/ /pubmed/27739454 http://dx.doi.org/10.1038/srep35337 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Boo, Ga Hun Hughey, Jeffery R. Miller, Kathy Ann Boo, Sung Min Mitogenomes from type specimens, a genotyping tool for morphologically simple species: ten genomes of agar-producing red algae |
title | Mitogenomes from type specimens, a genotyping tool for morphologically simple species: ten genomes of agar-producing red algae |
title_full | Mitogenomes from type specimens, a genotyping tool for morphologically simple species: ten genomes of agar-producing red algae |
title_fullStr | Mitogenomes from type specimens, a genotyping tool for morphologically simple species: ten genomes of agar-producing red algae |
title_full_unstemmed | Mitogenomes from type specimens, a genotyping tool for morphologically simple species: ten genomes of agar-producing red algae |
title_short | Mitogenomes from type specimens, a genotyping tool for morphologically simple species: ten genomes of agar-producing red algae |
title_sort | mitogenomes from type specimens, a genotyping tool for morphologically simple species: ten genomes of agar-producing red algae |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5064358/ https://www.ncbi.nlm.nih.gov/pubmed/27739454 http://dx.doi.org/10.1038/srep35337 |
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