Cargando…

BMDExpress Data Viewer ‐ a visualization tool to analyze BMDExpress datasets

Regulatory agencies increasingly apply benchmark dose (BMD) modeling to determine points of departure for risk assessment. BMDExpress applies BMD modeling to transcriptomic datasets to identify transcriptional BMDs. However, graphing and analytical capabilities within BMDExpress are limited, and the...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kuo, Byron, Francina Webster, A., Thomas, Russell S., Yauk, Carole L.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	John Wiley and Sons Inc. 2015
Materias:	Research Articles
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5064610/ https://www.ncbi.nlm.nih.gov/pubmed/26671443 http://dx.doi.org/10.1002/jat.3265

Ejemplares similares

BMDExpress: a software tool for the benchmark dose analyses of genomic data
por: Yang, Longlong, et al.
Publicado: (2007)

Impact of Genomics Platform and Statistical Filtering on Transcriptional Benchmark Doses (BMD) and Multiple Approaches for Selection of Chemical Point of Departure (PoD)
por: Webster, A. Francina, et al.
Publicado: (2015)

Chromosome Visualization Tool: A Whole Genome Viewer
por: Cannon, Ethalinda K. S., et al.
Publicado: (2011)

The Connectome Viewer Toolkit: An Open Source Framework to Manage, Analyze, and Visualize Connectomes
por: Gerhard, Stephan, et al.
Publicado: (2011)

Geno viewer, a SAM/BAM viewer tool
por: Laczik, Miklós, et al.
Publicado: (2012)

Gene expression analysis of livers from female B6C3F1 mice exposed to carcinogenic and non-carcinogenic doses of furan, with or without bromodeoxyuridine (BrdU) treatment
por: Webster, Anna Francina, et al.
Publicado: (2014)

GlycoViewer: a tool for visual summary and comparative analysis of the glycome
por: Joshi, Hiren J., et al.
Publicado: (2010)

scViewer: An Interactive Single-Cell Gene Expression Visualization Tool
por: Patil, Abhijeet R., et al.
Publicado: (2023)

Web based tools for visualizing imaging data and development of XNATView, a zero footprint image viewer
por: Gutman, David A., et al.
Publicado: (2014)

TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure
por: Alako, Blaise T. F., et al.
Publicado: (2006)

DataViewer3D: An Open-Source, Cross-Platform Multi-Modal Neuroimaging Data Visualization Tool
por: Gouws, André, et al.
Publicado: (2009)

BrainNet Viewer: A Network Visualization Tool for Human Brain Connectomics
por: Xia, Mingrui, et al.
Publicado: (2013)

Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV)
por: Rangwala, Sanjida H., et al.
Publicado: (2021)

AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context
por: Martin, Olivier, et al.
Publicado: (2009)

ComplexViewer: visualization of curated macromolecular complexes
por: Combe, Colin W, et al.
Publicado: (2017)

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
por: Thorvaldsdóttir, Helga, et al.
Publicado: (2013)

MEA Viewer: A high-performance interactive application for visualizing electrophysiological data
por: Bridges, Daniel C., et al.
Publicado: (2018)

HDX-Viewer: interactive 3D visualization of hydrogen–deuterium exchange data
por: Bouyssié, David, et al.
Publicado: (2019)

ScopeViewer: A Browser-Based Solution for Visualizing Spatial Transcriptomics Data
por: Luo, Danni, et al.
Publicado: (2023)

ADataViewer: exploring semantically harmonized Alzheimer’s disease cohort datasets
por: Salimi, Yasamin, et al.
Publicado: (2022)

Stereoscopic 3D geometric distortions analyzed from the viewer’s point of view
por: Gao, Zhongpai, et al.
Publicado: (2020)

Real-time analytics: techniques to analyze and visualize streaming data
por: Ellis, Byron
Publicado: (2014)

Multiple genome viewer (MGV): a new tool for visualization and comparison of multiple annotated genomes
por: Richardson, Joel E., et al.
Publicado: (2021)

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets
por: Bertelli, Claire, et al.
Publicado: (2017)

IslandViewer update: improved genomic island discovery and visualization
por: Dhillon, Bhavjinder K., et al.
Publicado: (2013)

NGL Viewer: a web application for molecular visualization
por: Rose, Alexander S., et al.
Publicado: (2015)

The JCB DataViewer scales up
por: Williams, Elizabeth H., et al.
Publicado: (2012)

The Pathway Tools cellular overview diagram and Omics Viewer
por: Paley, Suzanne M., et al.
Publicado: (2006)

Interoperable slide microscopy viewer and annotation tool for imaging data science and computational pathology
por: Gorman, Chris, et al.
Publicado: (2023)

HTML5 PivotViewer: high-throughput visualization and querying of image data on the web
por: Taylor, Stephen, et al.
Publicado: (2014)

AliView: a fast and lightweight alignment viewer and editor for large datasets
por: Larsson, Anders
Publicado: (2014)

Dataset for the analysis of TV viewer response to live sport broadcasts and sponsor messages
por: Breuer, Christoph, et al.
Publicado: (2021)

A framework for the use of single-chemical transcriptomics data in predicting the hazards associated with complex mixtures of polycyclic aromatic hydrocarbons
por: Labib, Sarah, et al.
Publicado: (2016)

WebChem Viewer: a tool for the easy dissemination of chemical and structural data sets
por: Durrant, Jacob D, et al.
Publicado: (2014)

GlassesViewer: Open-source software for viewing and analyzing data from the Tobii Pro Glasses 2 eye tracker
por: Niehorster, Diederick C., et al.
Publicado: (2020)

Visualization of Documents and Concepts in Neuroinformatics with the 3D-SE Viewer
por: Naud, Antoine, et al.
Publicado: (2007)

Visualization of RNA structure models within the Integrative Genomics Viewer
por: Busan, Steven, et al.
Publicado: (2017)

PyXlinkViewer: A flexible tool for visualization of protein chemical crosslinking data within the PyMOL molecular graphics system
por: Schiffrin, Bob, et al.
Publicado: (2020)

A benchmark dataset for analyzing and visualizing the dynamic epiproteome
por: Kaur, Sandeep, et al.
Publicado: (2019)

IslandViewer: an integrated interface for computational identification and visualization of genomic islands
por: Langille, Morgan G. I., et al.
Publicado: (2009)

Cannot write session to /tmp/vufind_sessions/sess_psvskvsfjfbqckqqsnlagqnuj4