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Detection of 549 new HLA alleles in potential stem cell donors from the United States, Poland and Germany

We characterized 549 new human leukocyte antigen (HLA) class I and class II alleles found in newly registered stem cell donors as a result of high‐throughput HLA typing. New alleles include 101 HLA‐A, 132 HLA‐B, 105 HLA‐C, 2 HLA‐DRB1, 89 HLA‐DQB1 and 120 HLA‐DPB1 alleles. Mainly, new alleles compris...

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Autores principales: Hernández‐Frederick, C. J., Cereb, N., Giani, A. S., Ruppel, J., Maraszek, A., Pingel, J., Sauter, J., Schmidt, A. H., Yang, S. Y.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Blackwell Publishing Ltd 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5064838/
https://www.ncbi.nlm.nih.gov/pubmed/26812061
http://dx.doi.org/10.1111/tan.12721
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author Hernández‐Frederick, C. J.
Cereb, N.
Giani, A. S.
Ruppel, J.
Maraszek, A.
Pingel, J.
Sauter, J.
Schmidt, A. H.
Yang, S. Y.
author_facet Hernández‐Frederick, C. J.
Cereb, N.
Giani, A. S.
Ruppel, J.
Maraszek, A.
Pingel, J.
Sauter, J.
Schmidt, A. H.
Yang, S. Y.
author_sort Hernández‐Frederick, C. J.
collection PubMed
description We characterized 549 new human leukocyte antigen (HLA) class I and class II alleles found in newly registered stem cell donors as a result of high‐throughput HLA typing. New alleles include 101 HLA‐A, 132 HLA‐B, 105 HLA‐C, 2 HLA‐DRB1, 89 HLA‐DQB1 and 120 HLA‐DPB1 alleles. Mainly, new alleles comprised single nucleotide variations when compared with homologous sequences. We identified nonsynonymous nucleotide mutations in 70.7% of all new alleles, synonymous variations in 26.4% and nonsense substitutions in 2.9% (null alleles). Some new alleles (55, 10.0%) were found multiple times, HLA‐DPB1 alleles being the most frequent among these. Furthermore, as several new alleles were identified in individuals from ethnic minority groups, the relevance of recruiting donors belonging to such groups and the importance of ethnicity data collection in donor centers and registries is highlighted.
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spelling pubmed-50648382016-10-19 Detection of 549 new HLA alleles in potential stem cell donors from the United States, Poland and Germany Hernández‐Frederick, C. J. Cereb, N. Giani, A. S. Ruppel, J. Maraszek, A. Pingel, J. Sauter, J. Schmidt, A. H. Yang, S. Y. HLA Brief Communication We characterized 549 new human leukocyte antigen (HLA) class I and class II alleles found in newly registered stem cell donors as a result of high‐throughput HLA typing. New alleles include 101 HLA‐A, 132 HLA‐B, 105 HLA‐C, 2 HLA‐DRB1, 89 HLA‐DQB1 and 120 HLA‐DPB1 alleles. Mainly, new alleles comprised single nucleotide variations when compared with homologous sequences. We identified nonsynonymous nucleotide mutations in 70.7% of all new alleles, synonymous variations in 26.4% and nonsense substitutions in 2.9% (null alleles). Some new alleles (55, 10.0%) were found multiple times, HLA‐DPB1 alleles being the most frequent among these. Furthermore, as several new alleles were identified in individuals from ethnic minority groups, the relevance of recruiting donors belonging to such groups and the importance of ethnicity data collection in donor centers and registries is highlighted. Blackwell Publishing Ltd 2016-01 2015-12-28 /pmc/articles/PMC5064838/ /pubmed/26812061 http://dx.doi.org/10.1111/tan.12721 Text en © 2015 The Authors. HLA published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial‐NoDerivs (http://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Brief Communication
Hernández‐Frederick, C. J.
Cereb, N.
Giani, A. S.
Ruppel, J.
Maraszek, A.
Pingel, J.
Sauter, J.
Schmidt, A. H.
Yang, S. Y.
Detection of 549 new HLA alleles in potential stem cell donors from the United States, Poland and Germany
title Detection of 549 new HLA alleles in potential stem cell donors from the United States, Poland and Germany
title_full Detection of 549 new HLA alleles in potential stem cell donors from the United States, Poland and Germany
title_fullStr Detection of 549 new HLA alleles in potential stem cell donors from the United States, Poland and Germany
title_full_unstemmed Detection of 549 new HLA alleles in potential stem cell donors from the United States, Poland and Germany
title_short Detection of 549 new HLA alleles in potential stem cell donors from the United States, Poland and Germany
title_sort detection of 549 new hla alleles in potential stem cell donors from the united states, poland and germany
topic Brief Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5064838/
https://www.ncbi.nlm.nih.gov/pubmed/26812061
http://dx.doi.org/10.1111/tan.12721
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