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Detection of 549 new HLA alleles in potential stem cell donors from the United States, Poland and Germany
We characterized 549 new human leukocyte antigen (HLA) class I and class II alleles found in newly registered stem cell donors as a result of high‐throughput HLA typing. New alleles include 101 HLA‐A, 132 HLA‐B, 105 HLA‐C, 2 HLA‐DRB1, 89 HLA‐DQB1 and 120 HLA‐DPB1 alleles. Mainly, new alleles compris...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Blackwell Publishing Ltd
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5064838/ https://www.ncbi.nlm.nih.gov/pubmed/26812061 http://dx.doi.org/10.1111/tan.12721 |
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author | Hernández‐Frederick, C. J. Cereb, N. Giani, A. S. Ruppel, J. Maraszek, A. Pingel, J. Sauter, J. Schmidt, A. H. Yang, S. Y. |
author_facet | Hernández‐Frederick, C. J. Cereb, N. Giani, A. S. Ruppel, J. Maraszek, A. Pingel, J. Sauter, J. Schmidt, A. H. Yang, S. Y. |
author_sort | Hernández‐Frederick, C. J. |
collection | PubMed |
description | We characterized 549 new human leukocyte antigen (HLA) class I and class II alleles found in newly registered stem cell donors as a result of high‐throughput HLA typing. New alleles include 101 HLA‐A, 132 HLA‐B, 105 HLA‐C, 2 HLA‐DRB1, 89 HLA‐DQB1 and 120 HLA‐DPB1 alleles. Mainly, new alleles comprised single nucleotide variations when compared with homologous sequences. We identified nonsynonymous nucleotide mutations in 70.7% of all new alleles, synonymous variations in 26.4% and nonsense substitutions in 2.9% (null alleles). Some new alleles (55, 10.0%) were found multiple times, HLA‐DPB1 alleles being the most frequent among these. Furthermore, as several new alleles were identified in individuals from ethnic minority groups, the relevance of recruiting donors belonging to such groups and the importance of ethnicity data collection in donor centers and registries is highlighted. |
format | Online Article Text |
id | pubmed-5064838 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Blackwell Publishing Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-50648382016-10-19 Detection of 549 new HLA alleles in potential stem cell donors from the United States, Poland and Germany Hernández‐Frederick, C. J. Cereb, N. Giani, A. S. Ruppel, J. Maraszek, A. Pingel, J. Sauter, J. Schmidt, A. H. Yang, S. Y. HLA Brief Communication We characterized 549 new human leukocyte antigen (HLA) class I and class II alleles found in newly registered stem cell donors as a result of high‐throughput HLA typing. New alleles include 101 HLA‐A, 132 HLA‐B, 105 HLA‐C, 2 HLA‐DRB1, 89 HLA‐DQB1 and 120 HLA‐DPB1 alleles. Mainly, new alleles comprised single nucleotide variations when compared with homologous sequences. We identified nonsynonymous nucleotide mutations in 70.7% of all new alleles, synonymous variations in 26.4% and nonsense substitutions in 2.9% (null alleles). Some new alleles (55, 10.0%) were found multiple times, HLA‐DPB1 alleles being the most frequent among these. Furthermore, as several new alleles were identified in individuals from ethnic minority groups, the relevance of recruiting donors belonging to such groups and the importance of ethnicity data collection in donor centers and registries is highlighted. Blackwell Publishing Ltd 2016-01 2015-12-28 /pmc/articles/PMC5064838/ /pubmed/26812061 http://dx.doi.org/10.1111/tan.12721 Text en © 2015 The Authors. HLA published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial‐NoDerivs (http://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Brief Communication Hernández‐Frederick, C. J. Cereb, N. Giani, A. S. Ruppel, J. Maraszek, A. Pingel, J. Sauter, J. Schmidt, A. H. Yang, S. Y. Detection of 549 new HLA alleles in potential stem cell donors from the United States, Poland and Germany |
title | Detection of 549 new HLA alleles in potential stem cell donors from the United States, Poland and Germany |
title_full | Detection of 549 new HLA alleles in potential stem cell donors from the United States, Poland and Germany |
title_fullStr | Detection of 549 new HLA alleles in potential stem cell donors from the United States, Poland and Germany |
title_full_unstemmed | Detection of 549 new HLA alleles in potential stem cell donors from the United States, Poland and Germany |
title_short | Detection of 549 new HLA alleles in potential stem cell donors from the United States, Poland and Germany |
title_sort | detection of 549 new hla alleles in potential stem cell donors from the united states, poland and germany |
topic | Brief Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5064838/ https://www.ncbi.nlm.nih.gov/pubmed/26812061 http://dx.doi.org/10.1111/tan.12721 |
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