Cargando…

SciData: a data model and ontology for semantic representation of scientific data

With the move toward global, Internet enabled science there is an inherent need to capture, store, aggregate and search scientific data across a large corpus of heterogeneous data silos. As a result, standards development is needed to create an infrastructure capable of representing the diverse natu...

Descripción completa

Detalles Bibliográficos
Autor principal: Chalk, Stuart J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5064921/
https://www.ncbi.nlm.nih.gov/pubmed/27795738
http://dx.doi.org/10.1186/s13321-016-0168-9
_version_ 1782460245725937664
author Chalk, Stuart J.
author_facet Chalk, Stuart J.
author_sort Chalk, Stuart J.
collection PubMed
description With the move toward global, Internet enabled science there is an inherent need to capture, store, aggregate and search scientific data across a large corpus of heterogeneous data silos. As a result, standards development is needed to create an infrastructure capable of representing the diverse nature of scientific data. This paper describes a fundamental data model for scientific data that can be applied to data currently stored in any format, and an associated ontology that affords semantic representation of the structure of scientific data (and its metadata), upon which discipline specific semantics can be applied. Application of this data model to experimental and computational chemistry data are presented, implemented using JavaScript Object Notation for Linked Data. Full examples are available at the project website (Chalk in SciData: a scientific data model. http://stuchalk.github.io/scidata/, 2016).
format Online
Article
Text
id pubmed-5064921
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Springer International Publishing
record_format MEDLINE/PubMed
spelling pubmed-50649212016-10-28 SciData: a data model and ontology for semantic representation of scientific data Chalk, Stuart J. J Cheminform Research Article With the move toward global, Internet enabled science there is an inherent need to capture, store, aggregate and search scientific data across a large corpus of heterogeneous data silos. As a result, standards development is needed to create an infrastructure capable of representing the diverse nature of scientific data. This paper describes a fundamental data model for scientific data that can be applied to data currently stored in any format, and an associated ontology that affords semantic representation of the structure of scientific data (and its metadata), upon which discipline specific semantics can be applied. Application of this data model to experimental and computational chemistry data are presented, implemented using JavaScript Object Notation for Linked Data. Full examples are available at the project website (Chalk in SciData: a scientific data model. http://stuchalk.github.io/scidata/, 2016). Springer International Publishing 2016-10-14 /pmc/articles/PMC5064921/ /pubmed/27795738 http://dx.doi.org/10.1186/s13321-016-0168-9 Text en © The Author(s) 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Chalk, Stuart J.
SciData: a data model and ontology for semantic representation of scientific data
title SciData: a data model and ontology for semantic representation of scientific data
title_full SciData: a data model and ontology for semantic representation of scientific data
title_fullStr SciData: a data model and ontology for semantic representation of scientific data
title_full_unstemmed SciData: a data model and ontology for semantic representation of scientific data
title_short SciData: a data model and ontology for semantic representation of scientific data
title_sort scidata: a data model and ontology for semantic representation of scientific data
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5064921/
https://www.ncbi.nlm.nih.gov/pubmed/27795738
http://dx.doi.org/10.1186/s13321-016-0168-9
work_keys_str_mv AT chalkstuartj scidataadatamodelandontologyforsemanticrepresentationofscientificdata