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SciData: a data model and ontology for semantic representation of scientific data
With the move toward global, Internet enabled science there is an inherent need to capture, store, aggregate and search scientific data across a large corpus of heterogeneous data silos. As a result, standards development is needed to create an infrastructure capable of representing the diverse natu...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Springer International Publishing
2016
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5064921/ https://www.ncbi.nlm.nih.gov/pubmed/27795738 http://dx.doi.org/10.1186/s13321-016-0168-9 |
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author | Chalk, Stuart J. |
author_facet | Chalk, Stuart J. |
author_sort | Chalk, Stuart J. |
collection | PubMed |
description | With the move toward global, Internet enabled science there is an inherent need to capture, store, aggregate and search scientific data across a large corpus of heterogeneous data silos. As a result, standards development is needed to create an infrastructure capable of representing the diverse nature of scientific data. This paper describes a fundamental data model for scientific data that can be applied to data currently stored in any format, and an associated ontology that affords semantic representation of the structure of scientific data (and its metadata), upon which discipline specific semantics can be applied. Application of this data model to experimental and computational chemistry data are presented, implemented using JavaScript Object Notation for Linked Data. Full examples are available at the project website (Chalk in SciData: a scientific data model. http://stuchalk.github.io/scidata/, 2016). |
format | Online Article Text |
id | pubmed-5064921 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-50649212016-10-28 SciData: a data model and ontology for semantic representation of scientific data Chalk, Stuart J. J Cheminform Research Article With the move toward global, Internet enabled science there is an inherent need to capture, store, aggregate and search scientific data across a large corpus of heterogeneous data silos. As a result, standards development is needed to create an infrastructure capable of representing the diverse nature of scientific data. This paper describes a fundamental data model for scientific data that can be applied to data currently stored in any format, and an associated ontology that affords semantic representation of the structure of scientific data (and its metadata), upon which discipline specific semantics can be applied. Application of this data model to experimental and computational chemistry data are presented, implemented using JavaScript Object Notation for Linked Data. Full examples are available at the project website (Chalk in SciData: a scientific data model. http://stuchalk.github.io/scidata/, 2016). Springer International Publishing 2016-10-14 /pmc/articles/PMC5064921/ /pubmed/27795738 http://dx.doi.org/10.1186/s13321-016-0168-9 Text en © The Author(s) 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Chalk, Stuart J. SciData: a data model and ontology for semantic representation of scientific data |
title | SciData: a data model and ontology for semantic representation of scientific data |
title_full | SciData: a data model and ontology for semantic representation of scientific data |
title_fullStr | SciData: a data model and ontology for semantic representation of scientific data |
title_full_unstemmed | SciData: a data model and ontology for semantic representation of scientific data |
title_short | SciData: a data model and ontology for semantic representation of scientific data |
title_sort | scidata: a data model and ontology for semantic representation of scientific data |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5064921/ https://www.ncbi.nlm.nih.gov/pubmed/27795738 http://dx.doi.org/10.1186/s13321-016-0168-9 |
work_keys_str_mv | AT chalkstuartj scidataadatamodelandontologyforsemanticrepresentationofscientificdata |