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Immuno-hybrid algorithm: a novel hybrid approach for GRN reconstruction
Bio-inspired algorithms are widely used to optimize the model parameters of GRN. In this paper, focus is given to develop improvised versions of bio-inspired algorithm for the specific problem of reconstruction of gene regulatory network. The approach is applied to the data set that was developed by...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5065543/ https://www.ncbi.nlm.nih.gov/pubmed/28330294 http://dx.doi.org/10.1007/s13205-016-0536-1 |
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author | Jereesh, A. S. Govindan, V. K. |
author_facet | Jereesh, A. S. Govindan, V. K. |
author_sort | Jereesh, A. S. |
collection | PubMed |
description | Bio-inspired algorithms are widely used to optimize the model parameters of GRN. In this paper, focus is given to develop improvised versions of bio-inspired algorithm for the specific problem of reconstruction of gene regulatory network. The approach is applied to the data set that was developed by the DNA microarray technology through biological experiments in the lab. This paper introduced a novel hybrid method, which combines the clonal selection algorithm and BFGS Quasi-Newton algorithm. The proposed approach implemented for real world E. coli data set and identified most of the relations. The results are also compared with the existing methods and proven to be efficient. |
format | Online Article Text |
id | pubmed-5065543 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-50655432016-10-15 Immuno-hybrid algorithm: a novel hybrid approach for GRN reconstruction Jereesh, A. S. Govindan, V. K. 3 Biotech Original Article Bio-inspired algorithms are widely used to optimize the model parameters of GRN. In this paper, focus is given to develop improvised versions of bio-inspired algorithm for the specific problem of reconstruction of gene regulatory network. The approach is applied to the data set that was developed by the DNA microarray technology through biological experiments in the lab. This paper introduced a novel hybrid method, which combines the clonal selection algorithm and BFGS Quasi-Newton algorithm. The proposed approach implemented for real world E. coli data set and identified most of the relations. The results are also compared with the existing methods and proven to be efficient. Springer Berlin Heidelberg 2016-10-14 2016-12 /pmc/articles/PMC5065543/ /pubmed/28330294 http://dx.doi.org/10.1007/s13205-016-0536-1 Text en © The Author(s) 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Original Article Jereesh, A. S. Govindan, V. K. Immuno-hybrid algorithm: a novel hybrid approach for GRN reconstruction |
title | Immuno-hybrid algorithm: a novel hybrid approach for GRN reconstruction |
title_full | Immuno-hybrid algorithm: a novel hybrid approach for GRN reconstruction |
title_fullStr | Immuno-hybrid algorithm: a novel hybrid approach for GRN reconstruction |
title_full_unstemmed | Immuno-hybrid algorithm: a novel hybrid approach for GRN reconstruction |
title_short | Immuno-hybrid algorithm: a novel hybrid approach for GRN reconstruction |
title_sort | immuno-hybrid algorithm: a novel hybrid approach for grn reconstruction |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5065543/ https://www.ncbi.nlm.nih.gov/pubmed/28330294 http://dx.doi.org/10.1007/s13205-016-0536-1 |
work_keys_str_mv | AT jereeshas immunohybridalgorithmanovelhybridapproachforgrnreconstruction AT govindanvk immunohybridalgorithmanovelhybridapproachforgrnreconstruction |