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Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants

Staphylococcus hominis is a predominant member of the human skin microbiome. We here report on the genomic analysis of Staphylococcus hominis strain Hudgins that was isolated from the wrist area of human skin. The partial genome assembly of S. hominis Hudgins consists of 2,211,863 bp of DNA with 217...

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Autores principales: Calkins, Shelby, Couger, M.B., Jackson, Colin, Zandler, Jordan, Hudgins, Garett C., Hanafy, Radwa A., Budd, Connie, French, Donald P., Hoff, Wouter D., Youssef, Noha
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5065635/
https://www.ncbi.nlm.nih.gov/pubmed/27766204
http://dx.doi.org/10.1016/j.gdata.2016.10.003
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author Calkins, Shelby
Couger, M.B.
Jackson, Colin
Zandler, Jordan
Hudgins, Garett C.
Hanafy, Radwa A.
Budd, Connie
French, Donald P.
Hoff, Wouter D.
Youssef, Noha
author_facet Calkins, Shelby
Couger, M.B.
Jackson, Colin
Zandler, Jordan
Hudgins, Garett C.
Hanafy, Radwa A.
Budd, Connie
French, Donald P.
Hoff, Wouter D.
Youssef, Noha
author_sort Calkins, Shelby
collection PubMed
description Staphylococcus hominis is a predominant member of the human skin microbiome. We here report on the genomic analysis of Staphylococcus hominis strain Hudgins that was isolated from the wrist area of human skin. The partial genome assembly of S. hominis Hudgins consists of 2,211,863 bp of DNA with 2174 protein-coding genes and 90 RNA genes. Based on the genomic analysis of KEGG pathways, the organism is expected to be a versatile heterotroph potentially capable of hydrolyzing the sugars glucose, fructose, mannose, and the amino acids alanine, aspartate, glutamate, glycine, threonine, cysteine, methionine, valine, isoleucine, leucine, lysine, arginine, phenylalanine, tyrosine, and tryptophan for energy production through aerobic respiration, with occasional lactate and acetate fermentation. Evidence for poly-gamma glutamate capsule and type IV Com system pili were identified in the genome. Based on COG analysis, the genome of S. hominis Hudgins clusters away from the previously published S. hominis genome ZBW5.
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spelling pubmed-50656352016-10-20 Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants Calkins, Shelby Couger, M.B. Jackson, Colin Zandler, Jordan Hudgins, Garett C. Hanafy, Radwa A. Budd, Connie French, Donald P. Hoff, Wouter D. Youssef, Noha Genom Data Regular Article Staphylococcus hominis is a predominant member of the human skin microbiome. We here report on the genomic analysis of Staphylococcus hominis strain Hudgins that was isolated from the wrist area of human skin. The partial genome assembly of S. hominis Hudgins consists of 2,211,863 bp of DNA with 2174 protein-coding genes and 90 RNA genes. Based on the genomic analysis of KEGG pathways, the organism is expected to be a versatile heterotroph potentially capable of hydrolyzing the sugars glucose, fructose, mannose, and the amino acids alanine, aspartate, glutamate, glycine, threonine, cysteine, methionine, valine, isoleucine, leucine, lysine, arginine, phenylalanine, tyrosine, and tryptophan for energy production through aerobic respiration, with occasional lactate and acetate fermentation. Evidence for poly-gamma glutamate capsule and type IV Com system pili were identified in the genome. Based on COG analysis, the genome of S. hominis Hudgins clusters away from the previously published S. hominis genome ZBW5. Elsevier 2016-10-07 /pmc/articles/PMC5065635/ /pubmed/27766204 http://dx.doi.org/10.1016/j.gdata.2016.10.003 Text en © 2016 Stellenbosch University http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Regular Article
Calkins, Shelby
Couger, M.B.
Jackson, Colin
Zandler, Jordan
Hudgins, Garett C.
Hanafy, Radwa A.
Budd, Connie
French, Donald P.
Hoff, Wouter D.
Youssef, Noha
Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants
title Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants
title_full Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants
title_fullStr Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants
title_full_unstemmed Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants
title_short Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants
title_sort draft genome sequence of staphylococcus hominis strain hudgins isolated from human skin implicates metabolic versatility and several virulence determinants
topic Regular Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5065635/
https://www.ncbi.nlm.nih.gov/pubmed/27766204
http://dx.doi.org/10.1016/j.gdata.2016.10.003
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