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Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants
Staphylococcus hominis is a predominant member of the human skin microbiome. We here report on the genomic analysis of Staphylococcus hominis strain Hudgins that was isolated from the wrist area of human skin. The partial genome assembly of S. hominis Hudgins consists of 2,211,863 bp of DNA with 217...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5065635/ https://www.ncbi.nlm.nih.gov/pubmed/27766204 http://dx.doi.org/10.1016/j.gdata.2016.10.003 |
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author | Calkins, Shelby Couger, M.B. Jackson, Colin Zandler, Jordan Hudgins, Garett C. Hanafy, Radwa A. Budd, Connie French, Donald P. Hoff, Wouter D. Youssef, Noha |
author_facet | Calkins, Shelby Couger, M.B. Jackson, Colin Zandler, Jordan Hudgins, Garett C. Hanafy, Radwa A. Budd, Connie French, Donald P. Hoff, Wouter D. Youssef, Noha |
author_sort | Calkins, Shelby |
collection | PubMed |
description | Staphylococcus hominis is a predominant member of the human skin microbiome. We here report on the genomic analysis of Staphylococcus hominis strain Hudgins that was isolated from the wrist area of human skin. The partial genome assembly of S. hominis Hudgins consists of 2,211,863 bp of DNA with 2174 protein-coding genes and 90 RNA genes. Based on the genomic analysis of KEGG pathways, the organism is expected to be a versatile heterotroph potentially capable of hydrolyzing the sugars glucose, fructose, mannose, and the amino acids alanine, aspartate, glutamate, glycine, threonine, cysteine, methionine, valine, isoleucine, leucine, lysine, arginine, phenylalanine, tyrosine, and tryptophan for energy production through aerobic respiration, with occasional lactate and acetate fermentation. Evidence for poly-gamma glutamate capsule and type IV Com system pili were identified in the genome. Based on COG analysis, the genome of S. hominis Hudgins clusters away from the previously published S. hominis genome ZBW5. |
format | Online Article Text |
id | pubmed-5065635 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-50656352016-10-20 Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants Calkins, Shelby Couger, M.B. Jackson, Colin Zandler, Jordan Hudgins, Garett C. Hanafy, Radwa A. Budd, Connie French, Donald P. Hoff, Wouter D. Youssef, Noha Genom Data Regular Article Staphylococcus hominis is a predominant member of the human skin microbiome. We here report on the genomic analysis of Staphylococcus hominis strain Hudgins that was isolated from the wrist area of human skin. The partial genome assembly of S. hominis Hudgins consists of 2,211,863 bp of DNA with 2174 protein-coding genes and 90 RNA genes. Based on the genomic analysis of KEGG pathways, the organism is expected to be a versatile heterotroph potentially capable of hydrolyzing the sugars glucose, fructose, mannose, and the amino acids alanine, aspartate, glutamate, glycine, threonine, cysteine, methionine, valine, isoleucine, leucine, lysine, arginine, phenylalanine, tyrosine, and tryptophan for energy production through aerobic respiration, with occasional lactate and acetate fermentation. Evidence for poly-gamma glutamate capsule and type IV Com system pili were identified in the genome. Based on COG analysis, the genome of S. hominis Hudgins clusters away from the previously published S. hominis genome ZBW5. Elsevier 2016-10-07 /pmc/articles/PMC5065635/ /pubmed/27766204 http://dx.doi.org/10.1016/j.gdata.2016.10.003 Text en © 2016 Stellenbosch University http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Regular Article Calkins, Shelby Couger, M.B. Jackson, Colin Zandler, Jordan Hudgins, Garett C. Hanafy, Radwa A. Budd, Connie French, Donald P. Hoff, Wouter D. Youssef, Noha Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants |
title | Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants |
title_full | Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants |
title_fullStr | Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants |
title_full_unstemmed | Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants |
title_short | Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants |
title_sort | draft genome sequence of staphylococcus hominis strain hudgins isolated from human skin implicates metabolic versatility and several virulence determinants |
topic | Regular Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5065635/ https://www.ncbi.nlm.nih.gov/pubmed/27766204 http://dx.doi.org/10.1016/j.gdata.2016.10.003 |
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