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Data for the qualitative modeling of the osmotic stress response to NaCl in Escherichia coli

Qualitative modeling approaches allow to provide a coarse-grained description of the functioning of cellular networks when experimental data are scarce and heterogeneous. We translate the primary literature data on the response of Escherichia coli to hyperosmotic stress caused by NaCl addition into...

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Autores principales: Ropers, Delphine, Métris, Aline
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5066198/
https://www.ncbi.nlm.nih.gov/pubmed/27766288
http://dx.doi.org/10.1016/j.dib.2016.09.028
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author Ropers, Delphine
Métris, Aline
author_facet Ropers, Delphine
Métris, Aline
author_sort Ropers, Delphine
collection PubMed
description Qualitative modeling approaches allow to provide a coarse-grained description of the functioning of cellular networks when experimental data are scarce and heterogeneous. We translate the primary literature data on the response of Escherichia coli to hyperosmotic stress caused by NaCl addition into a piecewise linear (PL) model. We provide a data file of the qualitative model, which can be used for simulation of changes of protein concentrations and of DNA coiling during the physiological response of the bacterium to the stress. The qualitative model predictions are directly comparable to the available experimental data. This data is related to the research article entitled “Piecewise linear approximations to model the dynamics of adaptation to osmotic stress by food-borne pathogens” (Metris et al., 2016) [1].
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spelling pubmed-50661982016-10-20 Data for the qualitative modeling of the osmotic stress response to NaCl in Escherichia coli Ropers, Delphine Métris, Aline Data Brief Data Article Qualitative modeling approaches allow to provide a coarse-grained description of the functioning of cellular networks when experimental data are scarce and heterogeneous. We translate the primary literature data on the response of Escherichia coli to hyperosmotic stress caused by NaCl addition into a piecewise linear (PL) model. We provide a data file of the qualitative model, which can be used for simulation of changes of protein concentrations and of DNA coiling during the physiological response of the bacterium to the stress. The qualitative model predictions are directly comparable to the available experimental data. This data is related to the research article entitled “Piecewise linear approximations to model the dynamics of adaptation to osmotic stress by food-borne pathogens” (Metris et al., 2016) [1]. Elsevier 2016-09-22 /pmc/articles/PMC5066198/ /pubmed/27766288 http://dx.doi.org/10.1016/j.dib.2016.09.028 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Ropers, Delphine
Métris, Aline
Data for the qualitative modeling of the osmotic stress response to NaCl in Escherichia coli
title Data for the qualitative modeling of the osmotic stress response to NaCl in Escherichia coli
title_full Data for the qualitative modeling of the osmotic stress response to NaCl in Escherichia coli
title_fullStr Data for the qualitative modeling of the osmotic stress response to NaCl in Escherichia coli
title_full_unstemmed Data for the qualitative modeling of the osmotic stress response to NaCl in Escherichia coli
title_short Data for the qualitative modeling of the osmotic stress response to NaCl in Escherichia coli
title_sort data for the qualitative modeling of the osmotic stress response to nacl in escherichia coli
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5066198/
https://www.ncbi.nlm.nih.gov/pubmed/27766288
http://dx.doi.org/10.1016/j.dib.2016.09.028
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