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Data for the qualitative modeling of the osmotic stress response to NaCl in Escherichia coli
Qualitative modeling approaches allow to provide a coarse-grained description of the functioning of cellular networks when experimental data are scarce and heterogeneous. We translate the primary literature data on the response of Escherichia coli to hyperosmotic stress caused by NaCl addition into...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5066198/ https://www.ncbi.nlm.nih.gov/pubmed/27766288 http://dx.doi.org/10.1016/j.dib.2016.09.028 |
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author | Ropers, Delphine Métris, Aline |
author_facet | Ropers, Delphine Métris, Aline |
author_sort | Ropers, Delphine |
collection | PubMed |
description | Qualitative modeling approaches allow to provide a coarse-grained description of the functioning of cellular networks when experimental data are scarce and heterogeneous. We translate the primary literature data on the response of Escherichia coli to hyperosmotic stress caused by NaCl addition into a piecewise linear (PL) model. We provide a data file of the qualitative model, which can be used for simulation of changes of protein concentrations and of DNA coiling during the physiological response of the bacterium to the stress. The qualitative model predictions are directly comparable to the available experimental data. This data is related to the research article entitled “Piecewise linear approximations to model the dynamics of adaptation to osmotic stress by food-borne pathogens” (Metris et al., 2016) [1]. |
format | Online Article Text |
id | pubmed-5066198 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-50661982016-10-20 Data for the qualitative modeling of the osmotic stress response to NaCl in Escherichia coli Ropers, Delphine Métris, Aline Data Brief Data Article Qualitative modeling approaches allow to provide a coarse-grained description of the functioning of cellular networks when experimental data are scarce and heterogeneous. We translate the primary literature data on the response of Escherichia coli to hyperosmotic stress caused by NaCl addition into a piecewise linear (PL) model. We provide a data file of the qualitative model, which can be used for simulation of changes of protein concentrations and of DNA coiling during the physiological response of the bacterium to the stress. The qualitative model predictions are directly comparable to the available experimental data. This data is related to the research article entitled “Piecewise linear approximations to model the dynamics of adaptation to osmotic stress by food-borne pathogens” (Metris et al., 2016) [1]. Elsevier 2016-09-22 /pmc/articles/PMC5066198/ /pubmed/27766288 http://dx.doi.org/10.1016/j.dib.2016.09.028 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Ropers, Delphine Métris, Aline Data for the qualitative modeling of the osmotic stress response to NaCl in Escherichia coli |
title | Data for the qualitative modeling of the osmotic stress response to NaCl in Escherichia coli |
title_full | Data for the qualitative modeling of the osmotic stress response to NaCl in Escherichia coli |
title_fullStr | Data for the qualitative modeling of the osmotic stress response to NaCl in Escherichia coli |
title_full_unstemmed | Data for the qualitative modeling of the osmotic stress response to NaCl in Escherichia coli |
title_short | Data for the qualitative modeling of the osmotic stress response to NaCl in Escherichia coli |
title_sort | data for the qualitative modeling of the osmotic stress response to nacl in escherichia coli |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5066198/ https://www.ncbi.nlm.nih.gov/pubmed/27766288 http://dx.doi.org/10.1016/j.dib.2016.09.028 |
work_keys_str_mv | AT ropersdelphine dataforthequalitativemodelingoftheosmoticstressresponsetonaclinescherichiacoli AT metrisaline dataforthequalitativemodelingoftheosmoticstressresponsetonaclinescherichiacoli |