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The first complete mitochondrial genome for the subfamily Limacodidae and implications for the higher phylogeny of Lepidoptera
The mitochondrial genome (mitogenome) provides important information for understanding molecular evolution and phylogeny. To determine the systematic status of the family Limacodidae within Lepidoptera, we infer a phylogenetic hypothesis based on the complete mitogenome of Monema flavescens (Lepidop...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5073316/ https://www.ncbi.nlm.nih.gov/pubmed/27767191 http://dx.doi.org/10.1038/srep35878 |
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author | Liu, Qiu-Ning Xin, Zhao-Zhe Bian, Dan-Dan Chai, Xin-Yue Zhou, Chun-Lin Tang, Bo-Ping |
author_facet | Liu, Qiu-Ning Xin, Zhao-Zhe Bian, Dan-Dan Chai, Xin-Yue Zhou, Chun-Lin Tang, Bo-Ping |
author_sort | Liu, Qiu-Ning |
collection | PubMed |
description | The mitochondrial genome (mitogenome) provides important information for understanding molecular evolution and phylogeny. To determine the systematic status of the family Limacodidae within Lepidoptera, we infer a phylogenetic hypothesis based on the complete mitogenome of Monema flavescens (Lepidoptera: Limacodidae). The mitogenome of M. flavescens is 15,396 base pairs (bp), and includes 13 protein-coding genes (PCGs), two ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes, and a control region (CR). The AT skew of this mitogenome is slightly negative and the nucleotide composition is also biased towards A + T nucleotides (80.5%). All PCGs are initiated by ATN codons, except for the cytochrome c oxidase subunit 1 (cox1) gene, which is initiated by CGA. All tRNAs display the typical clover-leaf structure characteristic of mitochondrial tRNAs, with the exception of trnS1 (AGN). The mitogenome CR is 401 bp and consists of several features common to Lepidoptera. Phylogenetic analysis using Bayesian Inference (BI) and Maximum Likelihood (ML) based on nucleotide and amino acid sequences of 13 mitochondrial PCGs indicates that M. flavescens belongs to Zygaenoidea. We obtain a well-supported phylogenetic tree consisting of Yponomeutoidea + (Tortricoidea + Zygaenoidea + (Papilionoidea + (Pyraloidea + (Noctuoidea + (Geometroidea + Bombycoidea))))). |
format | Online Article Text |
id | pubmed-5073316 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-50733162016-10-26 The first complete mitochondrial genome for the subfamily Limacodidae and implications for the higher phylogeny of Lepidoptera Liu, Qiu-Ning Xin, Zhao-Zhe Bian, Dan-Dan Chai, Xin-Yue Zhou, Chun-Lin Tang, Bo-Ping Sci Rep Article The mitochondrial genome (mitogenome) provides important information for understanding molecular evolution and phylogeny. To determine the systematic status of the family Limacodidae within Lepidoptera, we infer a phylogenetic hypothesis based on the complete mitogenome of Monema flavescens (Lepidoptera: Limacodidae). The mitogenome of M. flavescens is 15,396 base pairs (bp), and includes 13 protein-coding genes (PCGs), two ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes, and a control region (CR). The AT skew of this mitogenome is slightly negative and the nucleotide composition is also biased towards A + T nucleotides (80.5%). All PCGs are initiated by ATN codons, except for the cytochrome c oxidase subunit 1 (cox1) gene, which is initiated by CGA. All tRNAs display the typical clover-leaf structure characteristic of mitochondrial tRNAs, with the exception of trnS1 (AGN). The mitogenome CR is 401 bp and consists of several features common to Lepidoptera. Phylogenetic analysis using Bayesian Inference (BI) and Maximum Likelihood (ML) based on nucleotide and amino acid sequences of 13 mitochondrial PCGs indicates that M. flavescens belongs to Zygaenoidea. We obtain a well-supported phylogenetic tree consisting of Yponomeutoidea + (Tortricoidea + Zygaenoidea + (Papilionoidea + (Pyraloidea + (Noctuoidea + (Geometroidea + Bombycoidea))))). Nature Publishing Group 2016-10-21 /pmc/articles/PMC5073316/ /pubmed/27767191 http://dx.doi.org/10.1038/srep35878 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Liu, Qiu-Ning Xin, Zhao-Zhe Bian, Dan-Dan Chai, Xin-Yue Zhou, Chun-Lin Tang, Bo-Ping The first complete mitochondrial genome for the subfamily Limacodidae and implications for the higher phylogeny of Lepidoptera |
title | The first complete mitochondrial genome for the subfamily Limacodidae and implications for the higher phylogeny of Lepidoptera |
title_full | The first complete mitochondrial genome for the subfamily Limacodidae and implications for the higher phylogeny of Lepidoptera |
title_fullStr | The first complete mitochondrial genome for the subfamily Limacodidae and implications for the higher phylogeny of Lepidoptera |
title_full_unstemmed | The first complete mitochondrial genome for the subfamily Limacodidae and implications for the higher phylogeny of Lepidoptera |
title_short | The first complete mitochondrial genome for the subfamily Limacodidae and implications for the higher phylogeny of Lepidoptera |
title_sort | first complete mitochondrial genome for the subfamily limacodidae and implications for the higher phylogeny of lepidoptera |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5073316/ https://www.ncbi.nlm.nih.gov/pubmed/27767191 http://dx.doi.org/10.1038/srep35878 |
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