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Isolation and identification of EST-SSR markers in Chunia bucklandioides (Hamamelidaceae)(1)

PREMISE OF THE STUDY: Chunia bucklandioides (Hamamelidaceae), endemic to Hainan, China, is listed as threatened in the IUCN Red List and is now only found on Mt. Diaoluo and Mt. Jianfeng. Thus, microsatellite markers were developed for future conservation genetic studies of this species. METHODS AND...

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Autores principales: Meng, Kaikai, Li, Mingwan, Fan, Qiang, Tan, Weizheng, Sun, Jian, Liao, Wenbo, Chen, Sufang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5077281/
https://www.ncbi.nlm.nih.gov/pubmed/27785382
http://dx.doi.org/10.3732/apps.1600064
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author Meng, Kaikai
Li, Mingwan
Fan, Qiang
Tan, Weizheng
Sun, Jian
Liao, Wenbo
Chen, Sufang
author_facet Meng, Kaikai
Li, Mingwan
Fan, Qiang
Tan, Weizheng
Sun, Jian
Liao, Wenbo
Chen, Sufang
author_sort Meng, Kaikai
collection PubMed
description PREMISE OF THE STUDY: Chunia bucklandioides (Hamamelidaceae), endemic to Hainan, China, is listed as threatened in the IUCN Red List and is now only found on Mt. Diaoluo and Mt. Jianfeng. Thus, microsatellite markers were developed for future conservation genetic studies of this species. METHODS AND RESULTS: A total of 115 primers were designed on the basis of the transcriptome data of C. bucklandioides. Of them, 59 successfully amplified in C. bucklandioides and polymorphisms were detected in 11; the number of alleles per locus varied from two to five, the observed heterozygosity ranged from 0.000 to 0.941, and the expected heterozygosity ranged from 0.000 to 0.699. A total of 13 primers amplified in Mytilaria laosensis, and five primers amplified in Exbucklandia tonkinensis and E. populnea. CONCLUSIONS: The markers screened here provide a basis to assess genetic structure and further establish conservation strategies for C. bucklandioides.
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spelling pubmed-50772812016-10-26 Isolation and identification of EST-SSR markers in Chunia bucklandioides (Hamamelidaceae)(1) Meng, Kaikai Li, Mingwan Fan, Qiang Tan, Weizheng Sun, Jian Liao, Wenbo Chen, Sufang Appl Plant Sci Primer Note PREMISE OF THE STUDY: Chunia bucklandioides (Hamamelidaceae), endemic to Hainan, China, is listed as threatened in the IUCN Red List and is now only found on Mt. Diaoluo and Mt. Jianfeng. Thus, microsatellite markers were developed for future conservation genetic studies of this species. METHODS AND RESULTS: A total of 115 primers were designed on the basis of the transcriptome data of C. bucklandioides. Of them, 59 successfully amplified in C. bucklandioides and polymorphisms were detected in 11; the number of alleles per locus varied from two to five, the observed heterozygosity ranged from 0.000 to 0.941, and the expected heterozygosity ranged from 0.000 to 0.699. A total of 13 primers amplified in Mytilaria laosensis, and five primers amplified in Exbucklandia tonkinensis and E. populnea. CONCLUSIONS: The markers screened here provide a basis to assess genetic structure and further establish conservation strategies for C. bucklandioides. Botanical Society of America 2016-10-14 /pmc/articles/PMC5077281/ /pubmed/27785382 http://dx.doi.org/10.3732/apps.1600064 Text en © 2016 Meng et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Meng, Kaikai
Li, Mingwan
Fan, Qiang
Tan, Weizheng
Sun, Jian
Liao, Wenbo
Chen, Sufang
Isolation and identification of EST-SSR markers in Chunia bucklandioides (Hamamelidaceae)(1)
title Isolation and identification of EST-SSR markers in Chunia bucklandioides (Hamamelidaceae)(1)
title_full Isolation and identification of EST-SSR markers in Chunia bucklandioides (Hamamelidaceae)(1)
title_fullStr Isolation and identification of EST-SSR markers in Chunia bucklandioides (Hamamelidaceae)(1)
title_full_unstemmed Isolation and identification of EST-SSR markers in Chunia bucklandioides (Hamamelidaceae)(1)
title_short Isolation and identification of EST-SSR markers in Chunia bucklandioides (Hamamelidaceae)(1)
title_sort isolation and identification of est-ssr markers in chunia bucklandioides (hamamelidaceae)(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5077281/
https://www.ncbi.nlm.nih.gov/pubmed/27785382
http://dx.doi.org/10.3732/apps.1600064
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