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Isolation and identification of EST-SSR markers in Chunia bucklandioides (Hamamelidaceae)(1)
PREMISE OF THE STUDY: Chunia bucklandioides (Hamamelidaceae), endemic to Hainan, China, is listed as threatened in the IUCN Red List and is now only found on Mt. Diaoluo and Mt. Jianfeng. Thus, microsatellite markers were developed for future conservation genetic studies of this species. METHODS AND...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5077281/ https://www.ncbi.nlm.nih.gov/pubmed/27785382 http://dx.doi.org/10.3732/apps.1600064 |
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author | Meng, Kaikai Li, Mingwan Fan, Qiang Tan, Weizheng Sun, Jian Liao, Wenbo Chen, Sufang |
author_facet | Meng, Kaikai Li, Mingwan Fan, Qiang Tan, Weizheng Sun, Jian Liao, Wenbo Chen, Sufang |
author_sort | Meng, Kaikai |
collection | PubMed |
description | PREMISE OF THE STUDY: Chunia bucklandioides (Hamamelidaceae), endemic to Hainan, China, is listed as threatened in the IUCN Red List and is now only found on Mt. Diaoluo and Mt. Jianfeng. Thus, microsatellite markers were developed for future conservation genetic studies of this species. METHODS AND RESULTS: A total of 115 primers were designed on the basis of the transcriptome data of C. bucklandioides. Of them, 59 successfully amplified in C. bucklandioides and polymorphisms were detected in 11; the number of alleles per locus varied from two to five, the observed heterozygosity ranged from 0.000 to 0.941, and the expected heterozygosity ranged from 0.000 to 0.699. A total of 13 primers amplified in Mytilaria laosensis, and five primers amplified in Exbucklandia tonkinensis and E. populnea. CONCLUSIONS: The markers screened here provide a basis to assess genetic structure and further establish conservation strategies for C. bucklandioides. |
format | Online Article Text |
id | pubmed-5077281 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-50772812016-10-26 Isolation and identification of EST-SSR markers in Chunia bucklandioides (Hamamelidaceae)(1) Meng, Kaikai Li, Mingwan Fan, Qiang Tan, Weizheng Sun, Jian Liao, Wenbo Chen, Sufang Appl Plant Sci Primer Note PREMISE OF THE STUDY: Chunia bucklandioides (Hamamelidaceae), endemic to Hainan, China, is listed as threatened in the IUCN Red List and is now only found on Mt. Diaoluo and Mt. Jianfeng. Thus, microsatellite markers were developed for future conservation genetic studies of this species. METHODS AND RESULTS: A total of 115 primers were designed on the basis of the transcriptome data of C. bucklandioides. Of them, 59 successfully amplified in C. bucklandioides and polymorphisms were detected in 11; the number of alleles per locus varied from two to five, the observed heterozygosity ranged from 0.000 to 0.941, and the expected heterozygosity ranged from 0.000 to 0.699. A total of 13 primers amplified in Mytilaria laosensis, and five primers amplified in Exbucklandia tonkinensis and E. populnea. CONCLUSIONS: The markers screened here provide a basis to assess genetic structure and further establish conservation strategies for C. bucklandioides. Botanical Society of America 2016-10-14 /pmc/articles/PMC5077281/ /pubmed/27785382 http://dx.doi.org/10.3732/apps.1600064 Text en © 2016 Meng et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note Meng, Kaikai Li, Mingwan Fan, Qiang Tan, Weizheng Sun, Jian Liao, Wenbo Chen, Sufang Isolation and identification of EST-SSR markers in Chunia bucklandioides (Hamamelidaceae)(1) |
title | Isolation and identification of EST-SSR markers in Chunia bucklandioides (Hamamelidaceae)(1) |
title_full | Isolation and identification of EST-SSR markers in Chunia bucklandioides (Hamamelidaceae)(1) |
title_fullStr | Isolation and identification of EST-SSR markers in Chunia bucklandioides (Hamamelidaceae)(1) |
title_full_unstemmed | Isolation and identification of EST-SSR markers in Chunia bucklandioides (Hamamelidaceae)(1) |
title_short | Isolation and identification of EST-SSR markers in Chunia bucklandioides (Hamamelidaceae)(1) |
title_sort | isolation and identification of est-ssr markers in chunia bucklandioides (hamamelidaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5077281/ https://www.ncbi.nlm.nih.gov/pubmed/27785382 http://dx.doi.org/10.3732/apps.1600064 |
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