Cargando…

Isolation and characterization of microsatellite markers in the Lepisorus clathratus complex (Polypodiaceae)(1)

PREMISE OF THE STUDY: Microsatellites were designed and characterized in the Sino-Himalayan fern Lepisorus clathratus complex (Polypodiaceae) to further study the phylogeography and reproductive ecology of this species. METHODS AND RESULTS: From a genomic library obtained by next-generation sequenci...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhao, Cun-Feng, Kwak, Myounghai, Xiang, Qiao-Ping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5077284/
https://www.ncbi.nlm.nih.gov/pubmed/27785385
http://dx.doi.org/10.3732/apps.1600069
_version_ 1782462153391865856
author Zhao, Cun-Feng
Kwak, Myounghai
Xiang, Qiao-Ping
author_facet Zhao, Cun-Feng
Kwak, Myounghai
Xiang, Qiao-Ping
author_sort Zhao, Cun-Feng
collection PubMed
description PREMISE OF THE STUDY: Microsatellites were designed and characterized in the Sino-Himalayan fern Lepisorus clathratus complex (Polypodiaceae) to further study the phylogeography and reproductive ecology of this species. METHODS AND RESULTS: From a genomic library obtained by next-generation sequencing, 10 polymorphic and six monomorphic microsatellite loci were developed. In one population of L. clathratus from Taibaishan in central China, the number of alleles observed for these microsatellites ranged from seven to 29, and observed and expected heterozygosity ranged from 0.463 to 0.919 and from 0.797 to 0.947, respectively. Cross-amplification in other taxa within this complex was successful, but cross-amplification was poor for other congeneric species. CONCLUSIONS: This set of newly developed microsatellite markers will be useful for assessing genetic diversity, population structure, and mating system, and to infer polyploid origin in the L. clathratus complex.
format Online
Article
Text
id pubmed-5077284
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Botanical Society of America
record_format MEDLINE/PubMed
spelling pubmed-50772842016-10-26 Isolation and characterization of microsatellite markers in the Lepisorus clathratus complex (Polypodiaceae)(1) Zhao, Cun-Feng Kwak, Myounghai Xiang, Qiao-Ping Appl Plant Sci Primer Note PREMISE OF THE STUDY: Microsatellites were designed and characterized in the Sino-Himalayan fern Lepisorus clathratus complex (Polypodiaceae) to further study the phylogeography and reproductive ecology of this species. METHODS AND RESULTS: From a genomic library obtained by next-generation sequencing, 10 polymorphic and six monomorphic microsatellite loci were developed. In one population of L. clathratus from Taibaishan in central China, the number of alleles observed for these microsatellites ranged from seven to 29, and observed and expected heterozygosity ranged from 0.463 to 0.919 and from 0.797 to 0.947, respectively. Cross-amplification in other taxa within this complex was successful, but cross-amplification was poor for other congeneric species. CONCLUSIONS: This set of newly developed microsatellite markers will be useful for assessing genetic diversity, population structure, and mating system, and to infer polyploid origin in the L. clathratus complex. Botanical Society of America 2016-10-12 /pmc/articles/PMC5077284/ /pubmed/27785385 http://dx.doi.org/10.3732/apps.1600069 Text en © 2016 Zhao et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Zhao, Cun-Feng
Kwak, Myounghai
Xiang, Qiao-Ping
Isolation and characterization of microsatellite markers in the Lepisorus clathratus complex (Polypodiaceae)(1)
title Isolation and characterization of microsatellite markers in the Lepisorus clathratus complex (Polypodiaceae)(1)
title_full Isolation and characterization of microsatellite markers in the Lepisorus clathratus complex (Polypodiaceae)(1)
title_fullStr Isolation and characterization of microsatellite markers in the Lepisorus clathratus complex (Polypodiaceae)(1)
title_full_unstemmed Isolation and characterization of microsatellite markers in the Lepisorus clathratus complex (Polypodiaceae)(1)
title_short Isolation and characterization of microsatellite markers in the Lepisorus clathratus complex (Polypodiaceae)(1)
title_sort isolation and characterization of microsatellite markers in the lepisorus clathratus complex (polypodiaceae)(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5077284/
https://www.ncbi.nlm.nih.gov/pubmed/27785385
http://dx.doi.org/10.3732/apps.1600069
work_keys_str_mv AT zhaocunfeng isolationandcharacterizationofmicrosatellitemarkersinthelepisorusclathratuscomplexpolypodiaceae1
AT kwakmyounghai isolationandcharacterizationofmicrosatellitemarkersinthelepisorusclathratuscomplexpolypodiaceae1
AT xiangqiaoping isolationandcharacterizationofmicrosatellitemarkersinthelepisorusclathratuscomplexpolypodiaceae1