Cargando…
Isolation and characterization of microsatellite markers in the Lepisorus clathratus complex (Polypodiaceae)(1)
PREMISE OF THE STUDY: Microsatellites were designed and characterized in the Sino-Himalayan fern Lepisorus clathratus complex (Polypodiaceae) to further study the phylogeography and reproductive ecology of this species. METHODS AND RESULTS: From a genomic library obtained by next-generation sequenci...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5077284/ https://www.ncbi.nlm.nih.gov/pubmed/27785385 http://dx.doi.org/10.3732/apps.1600069 |
_version_ | 1782462153391865856 |
---|---|
author | Zhao, Cun-Feng Kwak, Myounghai Xiang, Qiao-Ping |
author_facet | Zhao, Cun-Feng Kwak, Myounghai Xiang, Qiao-Ping |
author_sort | Zhao, Cun-Feng |
collection | PubMed |
description | PREMISE OF THE STUDY: Microsatellites were designed and characterized in the Sino-Himalayan fern Lepisorus clathratus complex (Polypodiaceae) to further study the phylogeography and reproductive ecology of this species. METHODS AND RESULTS: From a genomic library obtained by next-generation sequencing, 10 polymorphic and six monomorphic microsatellite loci were developed. In one population of L. clathratus from Taibaishan in central China, the number of alleles observed for these microsatellites ranged from seven to 29, and observed and expected heterozygosity ranged from 0.463 to 0.919 and from 0.797 to 0.947, respectively. Cross-amplification in other taxa within this complex was successful, but cross-amplification was poor for other congeneric species. CONCLUSIONS: This set of newly developed microsatellite markers will be useful for assessing genetic diversity, population structure, and mating system, and to infer polyploid origin in the L. clathratus complex. |
format | Online Article Text |
id | pubmed-5077284 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-50772842016-10-26 Isolation and characterization of microsatellite markers in the Lepisorus clathratus complex (Polypodiaceae)(1) Zhao, Cun-Feng Kwak, Myounghai Xiang, Qiao-Ping Appl Plant Sci Primer Note PREMISE OF THE STUDY: Microsatellites were designed and characterized in the Sino-Himalayan fern Lepisorus clathratus complex (Polypodiaceae) to further study the phylogeography and reproductive ecology of this species. METHODS AND RESULTS: From a genomic library obtained by next-generation sequencing, 10 polymorphic and six monomorphic microsatellite loci were developed. In one population of L. clathratus from Taibaishan in central China, the number of alleles observed for these microsatellites ranged from seven to 29, and observed and expected heterozygosity ranged from 0.463 to 0.919 and from 0.797 to 0.947, respectively. Cross-amplification in other taxa within this complex was successful, but cross-amplification was poor for other congeneric species. CONCLUSIONS: This set of newly developed microsatellite markers will be useful for assessing genetic diversity, population structure, and mating system, and to infer polyploid origin in the L. clathratus complex. Botanical Society of America 2016-10-12 /pmc/articles/PMC5077284/ /pubmed/27785385 http://dx.doi.org/10.3732/apps.1600069 Text en © 2016 Zhao et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note Zhao, Cun-Feng Kwak, Myounghai Xiang, Qiao-Ping Isolation and characterization of microsatellite markers in the Lepisorus clathratus complex (Polypodiaceae)(1) |
title | Isolation and characterization of microsatellite markers in the Lepisorus clathratus complex (Polypodiaceae)(1) |
title_full | Isolation and characterization of microsatellite markers in the Lepisorus clathratus complex (Polypodiaceae)(1) |
title_fullStr | Isolation and characterization of microsatellite markers in the Lepisorus clathratus complex (Polypodiaceae)(1) |
title_full_unstemmed | Isolation and characterization of microsatellite markers in the Lepisorus clathratus complex (Polypodiaceae)(1) |
title_short | Isolation and characterization of microsatellite markers in the Lepisorus clathratus complex (Polypodiaceae)(1) |
title_sort | isolation and characterization of microsatellite markers in the lepisorus clathratus complex (polypodiaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5077284/ https://www.ncbi.nlm.nih.gov/pubmed/27785385 http://dx.doi.org/10.3732/apps.1600069 |
work_keys_str_mv | AT zhaocunfeng isolationandcharacterizationofmicrosatellitemarkersinthelepisorusclathratuscomplexpolypodiaceae1 AT kwakmyounghai isolationandcharacterizationofmicrosatellitemarkersinthelepisorusclathratuscomplexpolypodiaceae1 AT xiangqiaoping isolationandcharacterizationofmicrosatellitemarkersinthelepisorusclathratuscomplexpolypodiaceae1 |