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Draft genome sequence of Streptomyces sp. TP-A0867, an alchivemycin producer
Streptomyces sp. TP-A0867 (=NBRC 109436) produces structurally complex polyketides designated alchivemycins A and B. Here, we report the draft genome sequence of this strain together with features of the organism and assembly, annotation, and analysis of the genome sequence. The 9.9 Mb genome of Str...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5078962/ https://www.ncbi.nlm.nih.gov/pubmed/27800124 http://dx.doi.org/10.1186/s40793-016-0207-1 |
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author | Komaki, Hisayuki Ichikawa, Natsuko Oguchi, Akio Hamada, Moriyuki Harunari, Enjuro Kodani, Shinya Fujita, Nobuyuki Igarashi, Yasuhiro |
author_facet | Komaki, Hisayuki Ichikawa, Natsuko Oguchi, Akio Hamada, Moriyuki Harunari, Enjuro Kodani, Shinya Fujita, Nobuyuki Igarashi, Yasuhiro |
author_sort | Komaki, Hisayuki |
collection | PubMed |
description | Streptomyces sp. TP-A0867 (=NBRC 109436) produces structurally complex polyketides designated alchivemycins A and B. Here, we report the draft genome sequence of this strain together with features of the organism and assembly, annotation, and analysis of the genome sequence. The 9.9 Mb genome of Streptomyces sp. TP-A0867 encodes 8,385 putative ORFs, of which 7,232 were assigned with COG categories. We successfully identified a hybrid polyketide synthase (PKS)/ nonribosomal peptide synthetase (NRPS) gene cluster that could be responsible for alchivemycin biosynthesis, and propose the biosynthetic pathway. The alchivemycin biosynthetic gene cluster is also present in Streptomyces rapamycinicus NRRL 5491(T), Streptomyces hygroscopicus subsp. hygroscopicus NBRC 16556, and Streptomyces ascomycinicus NBRC 13981(T), which are taxonomically highly close to strain TP-A0867. This study shows a representative example that distribution of secondary metabolite genes is correlated with evolution within the genus Streptomyces. |
format | Online Article Text |
id | pubmed-5078962 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-50789622016-10-31 Draft genome sequence of Streptomyces sp. TP-A0867, an alchivemycin producer Komaki, Hisayuki Ichikawa, Natsuko Oguchi, Akio Hamada, Moriyuki Harunari, Enjuro Kodani, Shinya Fujita, Nobuyuki Igarashi, Yasuhiro Stand Genomic Sci Short Genome Report Streptomyces sp. TP-A0867 (=NBRC 109436) produces structurally complex polyketides designated alchivemycins A and B. Here, we report the draft genome sequence of this strain together with features of the organism and assembly, annotation, and analysis of the genome sequence. The 9.9 Mb genome of Streptomyces sp. TP-A0867 encodes 8,385 putative ORFs, of which 7,232 were assigned with COG categories. We successfully identified a hybrid polyketide synthase (PKS)/ nonribosomal peptide synthetase (NRPS) gene cluster that could be responsible for alchivemycin biosynthesis, and propose the biosynthetic pathway. The alchivemycin biosynthetic gene cluster is also present in Streptomyces rapamycinicus NRRL 5491(T), Streptomyces hygroscopicus subsp. hygroscopicus NBRC 16556, and Streptomyces ascomycinicus NBRC 13981(T), which are taxonomically highly close to strain TP-A0867. This study shows a representative example that distribution of secondary metabolite genes is correlated with evolution within the genus Streptomyces. BioMed Central 2016-10-24 /pmc/articles/PMC5078962/ /pubmed/27800124 http://dx.doi.org/10.1186/s40793-016-0207-1 Text en © The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Komaki, Hisayuki Ichikawa, Natsuko Oguchi, Akio Hamada, Moriyuki Harunari, Enjuro Kodani, Shinya Fujita, Nobuyuki Igarashi, Yasuhiro Draft genome sequence of Streptomyces sp. TP-A0867, an alchivemycin producer |
title | Draft genome sequence of Streptomyces sp. TP-A0867, an alchivemycin producer |
title_full | Draft genome sequence of Streptomyces sp. TP-A0867, an alchivemycin producer |
title_fullStr | Draft genome sequence of Streptomyces sp. TP-A0867, an alchivemycin producer |
title_full_unstemmed | Draft genome sequence of Streptomyces sp. TP-A0867, an alchivemycin producer |
title_short | Draft genome sequence of Streptomyces sp. TP-A0867, an alchivemycin producer |
title_sort | draft genome sequence of streptomyces sp. tp-a0867, an alchivemycin producer |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5078962/ https://www.ncbi.nlm.nih.gov/pubmed/27800124 http://dx.doi.org/10.1186/s40793-016-0207-1 |
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