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Draft genome sequence of Streptomyces sp. TP-A0867, an alchivemycin producer

Streptomyces sp. TP-A0867 (=NBRC 109436) produces structurally complex polyketides designated alchivemycins A and B. Here, we report the draft genome sequence of this strain together with features of the organism and assembly, annotation, and analysis of the genome sequence. The 9.9 Mb genome of Str...

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Autores principales: Komaki, Hisayuki, Ichikawa, Natsuko, Oguchi, Akio, Hamada, Moriyuki, Harunari, Enjuro, Kodani, Shinya, Fujita, Nobuyuki, Igarashi, Yasuhiro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5078962/
https://www.ncbi.nlm.nih.gov/pubmed/27800124
http://dx.doi.org/10.1186/s40793-016-0207-1
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author Komaki, Hisayuki
Ichikawa, Natsuko
Oguchi, Akio
Hamada, Moriyuki
Harunari, Enjuro
Kodani, Shinya
Fujita, Nobuyuki
Igarashi, Yasuhiro
author_facet Komaki, Hisayuki
Ichikawa, Natsuko
Oguchi, Akio
Hamada, Moriyuki
Harunari, Enjuro
Kodani, Shinya
Fujita, Nobuyuki
Igarashi, Yasuhiro
author_sort Komaki, Hisayuki
collection PubMed
description Streptomyces sp. TP-A0867 (=NBRC 109436) produces structurally complex polyketides designated alchivemycins A and B. Here, we report the draft genome sequence of this strain together with features of the organism and assembly, annotation, and analysis of the genome sequence. The 9.9 Mb genome of Streptomyces sp. TP-A0867 encodes 8,385 putative ORFs, of which 7,232 were assigned with COG categories. We successfully identified a hybrid polyketide synthase (PKS)/ nonribosomal peptide synthetase (NRPS) gene cluster that could be responsible for alchivemycin biosynthesis, and propose the biosynthetic pathway. The alchivemycin biosynthetic gene cluster is also present in Streptomyces rapamycinicus NRRL 5491(T), Streptomyces hygroscopicus subsp. hygroscopicus NBRC 16556, and Streptomyces ascomycinicus NBRC 13981(T), which are taxonomically highly close to strain TP-A0867. This study shows a representative example that distribution of secondary metabolite genes is correlated with evolution within the genus Streptomyces.
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spelling pubmed-50789622016-10-31 Draft genome sequence of Streptomyces sp. TP-A0867, an alchivemycin producer Komaki, Hisayuki Ichikawa, Natsuko Oguchi, Akio Hamada, Moriyuki Harunari, Enjuro Kodani, Shinya Fujita, Nobuyuki Igarashi, Yasuhiro Stand Genomic Sci Short Genome Report Streptomyces sp. TP-A0867 (=NBRC 109436) produces structurally complex polyketides designated alchivemycins A and B. Here, we report the draft genome sequence of this strain together with features of the organism and assembly, annotation, and analysis of the genome sequence. The 9.9 Mb genome of Streptomyces sp. TP-A0867 encodes 8,385 putative ORFs, of which 7,232 were assigned with COG categories. We successfully identified a hybrid polyketide synthase (PKS)/ nonribosomal peptide synthetase (NRPS) gene cluster that could be responsible for alchivemycin biosynthesis, and propose the biosynthetic pathway. The alchivemycin biosynthetic gene cluster is also present in Streptomyces rapamycinicus NRRL 5491(T), Streptomyces hygroscopicus subsp. hygroscopicus NBRC 16556, and Streptomyces ascomycinicus NBRC 13981(T), which are taxonomically highly close to strain TP-A0867. This study shows a representative example that distribution of secondary metabolite genes is correlated with evolution within the genus Streptomyces. BioMed Central 2016-10-24 /pmc/articles/PMC5078962/ /pubmed/27800124 http://dx.doi.org/10.1186/s40793-016-0207-1 Text en © The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Komaki, Hisayuki
Ichikawa, Natsuko
Oguchi, Akio
Hamada, Moriyuki
Harunari, Enjuro
Kodani, Shinya
Fujita, Nobuyuki
Igarashi, Yasuhiro
Draft genome sequence of Streptomyces sp. TP-A0867, an alchivemycin producer
title Draft genome sequence of Streptomyces sp. TP-A0867, an alchivemycin producer
title_full Draft genome sequence of Streptomyces sp. TP-A0867, an alchivemycin producer
title_fullStr Draft genome sequence of Streptomyces sp. TP-A0867, an alchivemycin producer
title_full_unstemmed Draft genome sequence of Streptomyces sp. TP-A0867, an alchivemycin producer
title_short Draft genome sequence of Streptomyces sp. TP-A0867, an alchivemycin producer
title_sort draft genome sequence of streptomyces sp. tp-a0867, an alchivemycin producer
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5078962/
https://www.ncbi.nlm.nih.gov/pubmed/27800124
http://dx.doi.org/10.1186/s40793-016-0207-1
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