Cargando…

Small Open Reading Frames, Non-Coding RNAs and Repetitive Elements in Bradyrhizobium japonicum USDA 110

Small open reading frames (sORFs) and genes for non-coding RNAs are poorly investigated components of most genomes. Our analysis of 1391 ORFs recently annotated in the soybean symbiont Bradyrhizobium japonicum USDA 110 revealed that 78% of them contain less than 80 codons. Twenty-one of these sORFs...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hahn, Julia, Tsoy, Olga V., Thalmann, Sebastian, Čuklina, Jelena, Gelfand, Mikhail S., Evguenieva-Hackenberg, Elena
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2016
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5082802/ https://www.ncbi.nlm.nih.gov/pubmed/27788207 http://dx.doi.org/10.1371/journal.pone.0165429

Ejemplares similares

Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis – a rich resource to identify new transcripts, proteins and to study gene regulation
por: Čuklina, Jelena, et al.
Publicado: (2016)

Identification of an Exopolysaccharide Biosynthesis Gene in Bradyrhizobium diazoefficiens USDA110
por: Xu, Chunxia, et al.
Publicado: (2021)

Complete Genome Sequence of the Soybean Symbiont Bradyrhizobium japonicum Strain USDA6(T)
por: Kaneko, Takakazu, et al.
Publicado: (2011)

Independent Component Analysis Reveals the Transcriptional Regulatory Modules in Bradyrhizobium diazoefficiens USDA110
por: Gao, Zhi-Peng, et al.
Publicado: (2023)

Bradyrhizobium diazoefficiens USDA110 PhaR functions for pleiotropic regulation of cellular processes besides PHB accumulation
por: Nishihata, Shogo, et al.
Publicado: (2018)

Bradyrhizobium diazoefficiens USDA110 Nodulation of Aeschynomene afraspera Is Associated with Atypical Terminal Bacteroid Differentiation and Suboptimal Symbiotic Efficiency
por: Nicoud, Quentin, et al.
Publicado: (2021)

Bradyrhizobium diazoefficiens USDA 110 displays plasticity in the attachment phenotype when grown in different soybean root exudate compounds
por: Sandhu, Armaan Kaur, et al.
Publicado: (2023)

Nitrogen Fixation and Molecular Oxygen: Comparative Genomic Reconstruction of Transcription Regulation in Alphaproteobacteria
por: Tsoy, Olga V., et al.
Publicado: (2016)

Computationally Reconstructed Interactome of Bradyrhizobium diazoefficiens USDA110 Reveals Novel Functional Modules and Protein Hubs for Symbiotic Nitrogen Fixation
por: Ma, Jun-Xiao, et al.
Publicado: (2021)

Classical Soybean (Glycine max (L.) Merr) Symbionts, Sinorhizobium fredii USDA191 and Bradyrhizobium diazoefficiens USDA110, Reveal Contrasting Symbiotic Phenotype on Pigeon Pea (Cajanus cajan (L.) Millsp)
por: Alaswad, Alaa A., et al.
Publicado: (2019)

Evolutionary Instability of Symbiotic Function in Bradyrhizobium japonicum
por: Sachs, Joel L., et al.
Publicado: (2011)

Anaerobic Reduction of Nitrate to Nitrous Oxide Is Lower in Bradyrhizobium japonicum than in Bradyrhizobium diazoefficiens
por: Siqueira, Arthur Fernandes, et al.
Publicado: (2017)

Growth Rate of and Gene Expression in Bradyrhizobium diazoefficiens USDA110 due to a Mutation in blr7984, a TetR Family Transcriptional Regulator Gene
por: Ohkama-Ohtsu, Naoko, et al.
Publicado: (2016)

Complete Genome Sequence of Bradyrhizobium japonicum Podophage Paso
por: McBee, Dylan, et al.
Publicado: (2021)

The ftsA gene as a molecular marker for phylogenetic studies in Bradyrhizobium and identification of Bradyrhizobium japonicum
por: Kalita, Michał, et al.
Publicado: (2018)

Levels of Periplasmic Nitrate Reductase during Denitrification are Lower in Bradyrhizobium japonicum than in Bradyrhizobium diazoefficiens
por: Siqueira, Arthur Fernandes, et al.
Publicado: (2020)

Genetic variation and genetic complexity of nodule occupancy in soybean inoculated with USDA110 and USDA123 rhizobium strains
por: Araya, Susan, et al.
Publicado: (2023)

Complete Genome Sequence of Bradyrhizobium diazoefficiens USDA 122, a Nitrogen-Fixing Soybean Symbiont
por: Sugawara, Masayuki, et al.
Publicado: (2017)

Identification of Bradyrhizobium elkanii USDA61 Type III Effectors Determining Symbiosis with Vigna mungo
por: Nguyen, Hien P., et al.
Publicado: (2020)

Soybean Lectin Enhances Biofilm Formation by Bradyrhizobium japonicum in the Absence of Plants
por: Pérez-Giménez, Julieta, et al.
Publicado: (2009)

Reactive Oxygen Species-Inducible ECF σ Factors of Bradyrhizobium japonicum
por: Masloboeva, Nadezda, et al.
Publicado: (2012)

Structure, function and inhibition of ent-kaurene synthase from Bradyrhizobium japonicum
por: Liu, Wenting, et al.
Publicado: (2014)

Whole-Genome Sequences of 14 Strains of Bradyrhizobium canariense and 1 Strain of Bradyrhizobium japonicum Isolated from Lupinus spp. in Algeria
por: Chekireb, Djamel, et al.
Publicado: (2017)

InnB, a Novel Type III Effector of Bradyrhizobium elkanii USDA61, Controls Symbiosis With Vigna Species
por: Nguyen, Hien P., et al.
Publicado: (2018)

Elucidation of the Genome of Bradyrhizobium sp. Strain USDA 3456, a Historic Agricultural Diazotroph from Cowpea (Vigna unguiculata)
por: White, Richard Allen, et al.
Publicado: (2019)

Draft Genome Sequence of the Bacteriocin-Producing Bradyrhizobium japonicum Strain FN1
por: Kohlmeier, MacLean G., et al.
Publicado: (2015)

An integrated biochemical system for nitrate assimilation and nitric oxide detoxification in Bradyrhizobium japonicum
por: Cabrera, Juan J., et al.
Publicado: (2016)

Characterization of a Functional Role of the Bradyrhizobium japonicum Isocitrate Lyase in Desiccation Tolerance
por: Jeon, Jeong-Min, et al.
Publicado: (2015)

Soybean Response to Seed Inoculation or Coating with Bradyrhizobium japonicum and Foliar Fertilization with Molybdenum
por: Jarecki, Wacław
Publicado: (2023)

Transposon sequencing analysis of Bradyrhizobium diazoefficiens 110spc4
por: Baraquet, Claudine, et al.
Publicado: (2021)

Comparative genomics of Bradyrhizobium japonicum CPAC 15 and Bradyrhizobium diazoefficiens CPAC 7: elite model strains for understanding symbiotic performance with soybean
por: Siqueira, Arthur Fernandes, et al.
Publicado: (2014)

Genetic variation in symbiotic islands of natural variant strains of soybean Bradyrhizobium japonicum and Bradyrhizobium diazoefficiens differing in competitiveness and in the efficiency of nitrogen fixation
por: Bender, Flavia Raquel, et al.
Publicado: (2022)

Bio-Priming of Soybean with Bradyrhizobium japonicum and Bacillus megaterium: Strategy to Improve Seed Germination and the Initial Seedling Growth
por: Miljaković, Dragana, et al.
Publicado: (2022)

Bradyrhizobium japonicum senses iron through the status of haem to regulate iron homeostasis and metabolism
por: Yang, Jianhua, et al.
Publicado: (2006)

Mutualistic Co-evolution of Type III Effector Genes in Sinorhizobium fredii and Bradyrhizobium japonicum
por: Kimbrel, Jeffrey A., et al.
Publicado: (2013)

Influence of Elevated Atmospheric Carbon Dioxide on Transcriptional Responses of Bradyrhizobium japonicum in the Soybean Rhizoplane
por: Sugawara, Masayuki, et al.
Publicado: (2013)

Kinetic and Structural Characterization of Tunnel-Perturbing Mutants in Bradyrhizobium japonicum Proline Utilization A
por: Arentson, Benjamin W., et al.
Publicado: (2014)

The Global Response Regulator RegR Controls Expression of Denitrification Genes in Bradyrhizobium japonicum
por: Torres, Maria J., et al.
Publicado: (2014)

Effects of Indole-3-Acetic Acid on the Transcriptional Activities and Stress Tolerance of Bradyrhizobium japonicum
por: Donati, Andrew J., et al.
Publicado: (2013)

System analysis of salt and osmotic stress induced proteins in Nostoc muscorum and Bradyrhizobium japonicum
por: Kaithwas, Vipin, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_1kuh44jh20b44qjcsv16isu6gn