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Successes and Short Comings in Four Years of an International External Quality Assurance Program for Animal Influenza Surveillance

The US National institutes of Health-Centers of Excellence for Influenza Research and Surveillance is a research consortium that funds numerous labs worldwide to conduct influenza A surveillance in diverse animal species. There is no harmonization of testing procedures among these labs; therefore an...

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Autores principales: Spackman, Erica, Cardona, Carol, Muñoz-Aguayo, Jeannette, Fleming, Susan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5083038/
https://www.ncbi.nlm.nih.gov/pubmed/27788155
http://dx.doi.org/10.1371/journal.pone.0164261
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author Spackman, Erica
Cardona, Carol
Muñoz-Aguayo, Jeannette
Fleming, Susan
author_facet Spackman, Erica
Cardona, Carol
Muñoz-Aguayo, Jeannette
Fleming, Susan
author_sort Spackman, Erica
collection PubMed
description The US National institutes of Health-Centers of Excellence for Influenza Research and Surveillance is a research consortium that funds numerous labs worldwide to conduct influenza A surveillance in diverse animal species. There is no harmonization of testing procedures among these labs; therefore an external quality assurance (EQA) program was implemented to evaluate testing accuracy among labs in the program in 2012. Accurate detection of novel influenza A variants is crucial because of the broad host range and potentially high virulence of the virus in diverse species. Two molecular detection sample sets and 2 serology sample sets (one with avian origin isolates, and one with mammalian origin isolates each) were made available at approximately six month intervals. Participating labs tested the material in accordance with their own protocols. During a five year period a total of 41 labs from 23 countries ordered a total of 132 avian molecular, 121 mammalian molecular and 90 serology sample sets. Testing was completed by 111 individuals. Detection of type A influenza by RT-PCR was reliable with a pass rate (80% or greater agreement with expected results) of 86.6% for avian and 86.2% for mammalian origin isolates. However, identification of subtype by RT-PCR was relatively poor with 54.1% and 75.9% accuracy for avian and mammalian influenza isolates respectively. Serological testing had an overall pass rate of 86.9% and 22/23 labs used commercial ELISA kits. Based on the results of this EQA program six labs modified their procedures to improve accuracy and one lab identified an unknown equipment problem. These data represent the successful implementation of an international EQA program for an infectious disease; insights into the logistics and test design are also discussed.
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spelling pubmed-50830382016-11-04 Successes and Short Comings in Four Years of an International External Quality Assurance Program for Animal Influenza Surveillance Spackman, Erica Cardona, Carol Muñoz-Aguayo, Jeannette Fleming, Susan PLoS One Research Article The US National institutes of Health-Centers of Excellence for Influenza Research and Surveillance is a research consortium that funds numerous labs worldwide to conduct influenza A surveillance in diverse animal species. There is no harmonization of testing procedures among these labs; therefore an external quality assurance (EQA) program was implemented to evaluate testing accuracy among labs in the program in 2012. Accurate detection of novel influenza A variants is crucial because of the broad host range and potentially high virulence of the virus in diverse species. Two molecular detection sample sets and 2 serology sample sets (one with avian origin isolates, and one with mammalian origin isolates each) were made available at approximately six month intervals. Participating labs tested the material in accordance with their own protocols. During a five year period a total of 41 labs from 23 countries ordered a total of 132 avian molecular, 121 mammalian molecular and 90 serology sample sets. Testing was completed by 111 individuals. Detection of type A influenza by RT-PCR was reliable with a pass rate (80% or greater agreement with expected results) of 86.6% for avian and 86.2% for mammalian origin isolates. However, identification of subtype by RT-PCR was relatively poor with 54.1% and 75.9% accuracy for avian and mammalian influenza isolates respectively. Serological testing had an overall pass rate of 86.9% and 22/23 labs used commercial ELISA kits. Based on the results of this EQA program six labs modified their procedures to improve accuracy and one lab identified an unknown equipment problem. These data represent the successful implementation of an international EQA program for an infectious disease; insights into the logistics and test design are also discussed. Public Library of Science 2016-10-27 /pmc/articles/PMC5083038/ /pubmed/27788155 http://dx.doi.org/10.1371/journal.pone.0164261 Text en https://creativecommons.org/publicdomain/zero/1.0/ This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public domain dedication.
spellingShingle Research Article
Spackman, Erica
Cardona, Carol
Muñoz-Aguayo, Jeannette
Fleming, Susan
Successes and Short Comings in Four Years of an International External Quality Assurance Program for Animal Influenza Surveillance
title Successes and Short Comings in Four Years of an International External Quality Assurance Program for Animal Influenza Surveillance
title_full Successes and Short Comings in Four Years of an International External Quality Assurance Program for Animal Influenza Surveillance
title_fullStr Successes and Short Comings in Four Years of an International External Quality Assurance Program for Animal Influenza Surveillance
title_full_unstemmed Successes and Short Comings in Four Years of an International External Quality Assurance Program for Animal Influenza Surveillance
title_short Successes and Short Comings in Four Years of an International External Quality Assurance Program for Animal Influenza Surveillance
title_sort successes and short comings in four years of an international external quality assurance program for animal influenza surveillance
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5083038/
https://www.ncbi.nlm.nih.gov/pubmed/27788155
http://dx.doi.org/10.1371/journal.pone.0164261
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