Cargando…

Antagonistic autoregulation speeds up a homogeneous response in Escherichia coli

By integrating positive and negative feedback loops, biological systems establish intricate gene expression patterns linked to multistability, pulsing, and oscillations. This depends on the specific characteristics of each interlinked feedback, and thus one would expect additional expression program...

Descripción completa

Detalles Bibliográficos
Autores principales: Rodrigo, Guillermo, Bajic, Djordje, Elola, Ignacio, Poyatos, Juan F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5086920/
https://www.ncbi.nlm.nih.gov/pubmed/27796341
http://dx.doi.org/10.1038/srep36196
_version_ 1782463832641241088
author Rodrigo, Guillermo
Bajic, Djordje
Elola, Ignacio
Poyatos, Juan F.
author_facet Rodrigo, Guillermo
Bajic, Djordje
Elola, Ignacio
Poyatos, Juan F.
author_sort Rodrigo, Guillermo
collection PubMed
description By integrating positive and negative feedback loops, biological systems establish intricate gene expression patterns linked to multistability, pulsing, and oscillations. This depends on the specific characteristics of each interlinked feedback, and thus one would expect additional expression programs to be found. Here, we investigate one such program associated with an antagonistic positive and negative transcriptional autoregulatory motif derived from the multiple antibiotic resistance (mar) system of Escherichia coli. We studied the dynamics of the system by combining a predictive mathematical model with high-resolution experimental measures of the response both at the population and single-cell level. We show that in this motif the weak positive autoregulation does not slow down but rather enhances response speedup in combination with a strong negative feedback loop. This balance of feedback strengths anticipates a homogeneous population phenotype, which we corroborate experimentally. Theoretical analysis also emphasized the specific molecular properties that determine the dynamics of the mar phenotype. More broadly, response acceleration could provide a rationale for the presence of weak positive feedbacks in other biological scenarios exhibiting these interlinked regulatory architectures.
format Online
Article
Text
id pubmed-5086920
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Nature Publishing Group
record_format MEDLINE/PubMed
spelling pubmed-50869202016-11-04 Antagonistic autoregulation speeds up a homogeneous response in Escherichia coli Rodrigo, Guillermo Bajic, Djordje Elola, Ignacio Poyatos, Juan F. Sci Rep Article By integrating positive and negative feedback loops, biological systems establish intricate gene expression patterns linked to multistability, pulsing, and oscillations. This depends on the specific characteristics of each interlinked feedback, and thus one would expect additional expression programs to be found. Here, we investigate one such program associated with an antagonistic positive and negative transcriptional autoregulatory motif derived from the multiple antibiotic resistance (mar) system of Escherichia coli. We studied the dynamics of the system by combining a predictive mathematical model with high-resolution experimental measures of the response both at the population and single-cell level. We show that in this motif the weak positive autoregulation does not slow down but rather enhances response speedup in combination with a strong negative feedback loop. This balance of feedback strengths anticipates a homogeneous population phenotype, which we corroborate experimentally. Theoretical analysis also emphasized the specific molecular properties that determine the dynamics of the mar phenotype. More broadly, response acceleration could provide a rationale for the presence of weak positive feedbacks in other biological scenarios exhibiting these interlinked regulatory architectures. Nature Publishing Group 2016-10-31 /pmc/articles/PMC5086920/ /pubmed/27796341 http://dx.doi.org/10.1038/srep36196 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Rodrigo, Guillermo
Bajic, Djordje
Elola, Ignacio
Poyatos, Juan F.
Antagonistic autoregulation speeds up a homogeneous response in Escherichia coli
title Antagonistic autoregulation speeds up a homogeneous response in Escherichia coli
title_full Antagonistic autoregulation speeds up a homogeneous response in Escherichia coli
title_fullStr Antagonistic autoregulation speeds up a homogeneous response in Escherichia coli
title_full_unstemmed Antagonistic autoregulation speeds up a homogeneous response in Escherichia coli
title_short Antagonistic autoregulation speeds up a homogeneous response in Escherichia coli
title_sort antagonistic autoregulation speeds up a homogeneous response in escherichia coli
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5086920/
https://www.ncbi.nlm.nih.gov/pubmed/27796341
http://dx.doi.org/10.1038/srep36196
work_keys_str_mv AT rodrigoguillermo antagonisticautoregulationspeedsupahomogeneousresponseinescherichiacoli
AT bajicdjordje antagonisticautoregulationspeedsupahomogeneousresponseinescherichiacoli
AT elolaignacio antagonisticautoregulationspeedsupahomogeneousresponseinescherichiacoli
AT poyatosjuanf antagonisticautoregulationspeedsupahomogeneousresponseinescherichiacoli