Cargando…
Integrating Remote Sensing with Species Distribution Models; Mapping Tamarisk Invasions Using the Software for Assisted Habitat Modeling (SAHM)
Early detection of invasive plant species is vital for the management of natural resources and protection of ecosystem processes. The use of satellite remote sensing for mapping the distribution of invasive plants is becoming more common, however conventional imaging software and classification meth...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MyJove Corporation
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5092193/ https://www.ncbi.nlm.nih.gov/pubmed/27768080 http://dx.doi.org/10.3791/54578 |
_version_ | 1782464683039522816 |
---|---|
author | West, Amanda M. Evangelista, Paul H. Jarnevich, Catherine S. Young, Nicholas E. Stohlgren, Thomas J. Talbert, Colin Talbert, Marian Morisette, Jeffrey Anderson, Ryan |
author_facet | West, Amanda M. Evangelista, Paul H. Jarnevich, Catherine S. Young, Nicholas E. Stohlgren, Thomas J. Talbert, Colin Talbert, Marian Morisette, Jeffrey Anderson, Ryan |
author_sort | West, Amanda M. |
collection | PubMed |
description | Early detection of invasive plant species is vital for the management of natural resources and protection of ecosystem processes. The use of satellite remote sensing for mapping the distribution of invasive plants is becoming more common, however conventional imaging software and classification methods have been shown to be unreliable. In this study, we test and evaluate the use of five species distribution model techniques fit with satellite remote sensing data to map invasive tamarisk (Tamarix spp.) along the Arkansas River in Southeastern Colorado. The models tested included boosted regression trees (BRT), Random Forest (RF), multivariate adaptive regression splines (MARS), generalized linear model (GLM), and Maxent. These analyses were conducted using a newly developed software package called the Software for Assisted Habitat Modeling (SAHM). All models were trained with 499 presence points, 10,000 pseudo-absence points, and predictor variables acquired from the Landsat 5 Thematic Mapper (TM) sensor over an eight-month period to distinguish tamarisk from native riparian vegetation using detection of phenological differences. From the Landsat scenes, we used individual bands and calculated Normalized Difference Vegetation Index (NDVI), Soil-Adjusted Vegetation Index (SAVI), and tasseled capped transformations. All five models identified current tamarisk distribution on the landscape successfully based on threshold independent and threshold dependent evaluation metrics with independent location data. To account for model specific differences, we produced an ensemble of all five models with map output highlighting areas of agreement and areas of uncertainty. Our results demonstrate the usefulness of species distribution models in analyzing remotely sensed data and the utility of ensemble mapping, and showcase the capability of SAHM in pre-processing and executing multiple complex models. |
format | Online Article Text |
id | pubmed-5092193 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | MyJove Corporation |
record_format | MEDLINE/PubMed |
spelling | pubmed-50921932016-11-15 Integrating Remote Sensing with Species Distribution Models; Mapping Tamarisk Invasions Using the Software for Assisted Habitat Modeling (SAHM) West, Amanda M. Evangelista, Paul H. Jarnevich, Catherine S. Young, Nicholas E. Stohlgren, Thomas J. Talbert, Colin Talbert, Marian Morisette, Jeffrey Anderson, Ryan J Vis Exp Environmental Sciences Early detection of invasive plant species is vital for the management of natural resources and protection of ecosystem processes. The use of satellite remote sensing for mapping the distribution of invasive plants is becoming more common, however conventional imaging software and classification methods have been shown to be unreliable. In this study, we test and evaluate the use of five species distribution model techniques fit with satellite remote sensing data to map invasive tamarisk (Tamarix spp.) along the Arkansas River in Southeastern Colorado. The models tested included boosted regression trees (BRT), Random Forest (RF), multivariate adaptive regression splines (MARS), generalized linear model (GLM), and Maxent. These analyses were conducted using a newly developed software package called the Software for Assisted Habitat Modeling (SAHM). All models were trained with 499 presence points, 10,000 pseudo-absence points, and predictor variables acquired from the Landsat 5 Thematic Mapper (TM) sensor over an eight-month period to distinguish tamarisk from native riparian vegetation using detection of phenological differences. From the Landsat scenes, we used individual bands and calculated Normalized Difference Vegetation Index (NDVI), Soil-Adjusted Vegetation Index (SAVI), and tasseled capped transformations. All five models identified current tamarisk distribution on the landscape successfully based on threshold independent and threshold dependent evaluation metrics with independent location data. To account for model specific differences, we produced an ensemble of all five models with map output highlighting areas of agreement and areas of uncertainty. Our results demonstrate the usefulness of species distribution models in analyzing remotely sensed data and the utility of ensemble mapping, and showcase the capability of SAHM in pre-processing and executing multiple complex models. MyJove Corporation 2016-10-11 /pmc/articles/PMC5092193/ /pubmed/27768080 http://dx.doi.org/10.3791/54578 Text en Copyright © 2016, Journal of Visualized Experiments http://creativecommons.org/licenses/by-nc-nd/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visithttp://creativecommons.org/licenses/by-nc-nd/3.0/ |
spellingShingle | Environmental Sciences West, Amanda M. Evangelista, Paul H. Jarnevich, Catherine S. Young, Nicholas E. Stohlgren, Thomas J. Talbert, Colin Talbert, Marian Morisette, Jeffrey Anderson, Ryan Integrating Remote Sensing with Species Distribution Models; Mapping Tamarisk Invasions Using the Software for Assisted Habitat Modeling (SAHM) |
title | Integrating Remote Sensing with Species Distribution Models; Mapping Tamarisk Invasions Using the Software for Assisted Habitat Modeling (SAHM) |
title_full | Integrating Remote Sensing with Species Distribution Models; Mapping Tamarisk Invasions Using the Software for Assisted Habitat Modeling (SAHM) |
title_fullStr | Integrating Remote Sensing with Species Distribution Models; Mapping Tamarisk Invasions Using the Software for Assisted Habitat Modeling (SAHM) |
title_full_unstemmed | Integrating Remote Sensing with Species Distribution Models; Mapping Tamarisk Invasions Using the Software for Assisted Habitat Modeling (SAHM) |
title_short | Integrating Remote Sensing with Species Distribution Models; Mapping Tamarisk Invasions Using the Software for Assisted Habitat Modeling (SAHM) |
title_sort | integrating remote sensing with species distribution models; mapping tamarisk invasions using the software for assisted habitat modeling (sahm) |
topic | Environmental Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5092193/ https://www.ncbi.nlm.nih.gov/pubmed/27768080 http://dx.doi.org/10.3791/54578 |
work_keys_str_mv | AT westamandam integratingremotesensingwithspeciesdistributionmodelsmappingtamariskinvasionsusingthesoftwareforassistedhabitatmodelingsahm AT evangelistapaulh integratingremotesensingwithspeciesdistributionmodelsmappingtamariskinvasionsusingthesoftwareforassistedhabitatmodelingsahm AT jarnevichcatherines integratingremotesensingwithspeciesdistributionmodelsmappingtamariskinvasionsusingthesoftwareforassistedhabitatmodelingsahm AT youngnicholase integratingremotesensingwithspeciesdistributionmodelsmappingtamariskinvasionsusingthesoftwareforassistedhabitatmodelingsahm AT stohlgrenthomasj integratingremotesensingwithspeciesdistributionmodelsmappingtamariskinvasionsusingthesoftwareforassistedhabitatmodelingsahm AT talbertcolin integratingremotesensingwithspeciesdistributionmodelsmappingtamariskinvasionsusingthesoftwareforassistedhabitatmodelingsahm AT talbertmarian integratingremotesensingwithspeciesdistributionmodelsmappingtamariskinvasionsusingthesoftwareforassistedhabitatmodelingsahm AT morisettejeffrey integratingremotesensingwithspeciesdistributionmodelsmappingtamariskinvasionsusingthesoftwareforassistedhabitatmodelingsahm AT andersonryan integratingremotesensingwithspeciesdistributionmodelsmappingtamariskinvasionsusingthesoftwareforassistedhabitatmodelingsahm |