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Resolution of ab initio shapes determined from small-angle scattering

Spatial resolution is an important characteristic of structural models, and the authors of structures determined by X-ray crystallography or electron cryo-microscopy always provide the resolution upon publication and deposition. Small-angle scattering of X-rays or neutrons (SAS) has recently become...

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Autores principales: Tuukkanen, Anne T., Kleywegt, Gerard J., Svergun, Dmitri I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5094446/
https://www.ncbi.nlm.nih.gov/pubmed/27840683
http://dx.doi.org/10.1107/S2052252516016018
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author Tuukkanen, Anne T.
Kleywegt, Gerard J.
Svergun, Dmitri I.
author_facet Tuukkanen, Anne T.
Kleywegt, Gerard J.
Svergun, Dmitri I.
author_sort Tuukkanen, Anne T.
collection PubMed
description Spatial resolution is an important characteristic of structural models, and the authors of structures determined by X-ray crystallography or electron cryo-microscopy always provide the resolution upon publication and deposition. Small-angle scattering of X-rays or neutrons (SAS) has recently become a mainstream structural method providing the overall three-dimensional structures of proteins, nucleic acids and complexes in solution. However, no quantitative resolution measure is available for SAS-derived models, which significantly hampers their validation and further use. Here, a method is derived for resolution assessment for ab initio shape reconstruction from scattering data. The inherent variability of the ab initio shapes is utilized and it is demonstrated how their average Fourier shell correlation function is related to the model resolution. The method is validated against simulated data for proteins with known high-resolution structures and its efficiency is demonstrated in applications to experimental data. It is proposed that henceforth the resolution be reported in publications and depositions of ab initio SAS models.
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spelling pubmed-50944462016-11-11 Resolution of ab initio shapes determined from small-angle scattering Tuukkanen, Anne T. Kleywegt, Gerard J. Svergun, Dmitri I. IUCrJ Research Papers Spatial resolution is an important characteristic of structural models, and the authors of structures determined by X-ray crystallography or electron cryo-microscopy always provide the resolution upon publication and deposition. Small-angle scattering of X-rays or neutrons (SAS) has recently become a mainstream structural method providing the overall three-dimensional structures of proteins, nucleic acids and complexes in solution. However, no quantitative resolution measure is available for SAS-derived models, which significantly hampers their validation and further use. Here, a method is derived for resolution assessment for ab initio shape reconstruction from scattering data. The inherent variability of the ab initio shapes is utilized and it is demonstrated how their average Fourier shell correlation function is related to the model resolution. The method is validated against simulated data for proteins with known high-resolution structures and its efficiency is demonstrated in applications to experimental data. It is proposed that henceforth the resolution be reported in publications and depositions of ab initio SAS models. International Union of Crystallography 2016-10-27 /pmc/articles/PMC5094446/ /pubmed/27840683 http://dx.doi.org/10.1107/S2052252516016018 Text en © Anne T. Tuukkanen et al. 2016 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Tuukkanen, Anne T.
Kleywegt, Gerard J.
Svergun, Dmitri I.
Resolution of ab initio shapes determined from small-angle scattering
title Resolution of ab initio shapes determined from small-angle scattering
title_full Resolution of ab initio shapes determined from small-angle scattering
title_fullStr Resolution of ab initio shapes determined from small-angle scattering
title_full_unstemmed Resolution of ab initio shapes determined from small-angle scattering
title_short Resolution of ab initio shapes determined from small-angle scattering
title_sort resolution of ab initio shapes determined from small-angle scattering
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5094446/
https://www.ncbi.nlm.nih.gov/pubmed/27840683
http://dx.doi.org/10.1107/S2052252516016018
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