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Structural Patterns under X-Rays: Is SNOMED CT Growing Straight?

Unprincipled modeling decisions in large-domain ontologies, such as SNOMED CT, are problematic and might act as a barrier for their quality assurance and successful use in electronic health records. Most previous work has focused on clustering problematic concepts, which is helpful for quality contr...

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Detalles Bibliográficos
Autores principales: López-García, Pablo, Schulz, Stefan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5094788/
https://www.ncbi.nlm.nih.gov/pubmed/27812127
http://dx.doi.org/10.1371/journal.pone.0165619
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author López-García, Pablo
Schulz, Stefan
author_facet López-García, Pablo
Schulz, Stefan
author_sort López-García, Pablo
collection PubMed
description Unprincipled modeling decisions in large-domain ontologies, such as SNOMED CT, are problematic and might act as a barrier for their quality assurance and successful use in electronic health records. Most previous work has focused on clustering problematic concepts, which is helpful for quality control but faces difficulties in pinpointing the origin of those modeling problems. In this study, we examined the underlying structural patterns in SNOMED CT’s data model as such patterns directly reflect the modeling strategies of editors. Our results showed that 92% of all structural patterns found accumulated in the Procedure and Clinical finding sub-hierarchies, and pattern reuse was low; over 30% of patterns were only used once. A qualitative analysis of a sample of 50 such singleton patterns revealed modeling problems, including redundancy, omission, and inconsistency. The problems detected in the sample suggest that the analysis of structural patterns is a valuable technique for revealing problematic areas of SNOMED CT and modeling the styles of terminology editors. Furthermore, the patterns that describe the modeling of a large number of concepts could provide insights for template creation and refinement in SNOMED CT.
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spelling pubmed-50947882016-11-18 Structural Patterns under X-Rays: Is SNOMED CT Growing Straight? López-García, Pablo Schulz, Stefan PLoS One Research Article Unprincipled modeling decisions in large-domain ontologies, such as SNOMED CT, are problematic and might act as a barrier for their quality assurance and successful use in electronic health records. Most previous work has focused on clustering problematic concepts, which is helpful for quality control but faces difficulties in pinpointing the origin of those modeling problems. In this study, we examined the underlying structural patterns in SNOMED CT’s data model as such patterns directly reflect the modeling strategies of editors. Our results showed that 92% of all structural patterns found accumulated in the Procedure and Clinical finding sub-hierarchies, and pattern reuse was low; over 30% of patterns were only used once. A qualitative analysis of a sample of 50 such singleton patterns revealed modeling problems, including redundancy, omission, and inconsistency. The problems detected in the sample suggest that the analysis of structural patterns is a valuable technique for revealing problematic areas of SNOMED CT and modeling the styles of terminology editors. Furthermore, the patterns that describe the modeling of a large number of concepts could provide insights for template creation and refinement in SNOMED CT. Public Library of Science 2016-11-03 /pmc/articles/PMC5094788/ /pubmed/27812127 http://dx.doi.org/10.1371/journal.pone.0165619 Text en © 2016 López-García, Schulz http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
López-García, Pablo
Schulz, Stefan
Structural Patterns under X-Rays: Is SNOMED CT Growing Straight?
title Structural Patterns under X-Rays: Is SNOMED CT Growing Straight?
title_full Structural Patterns under X-Rays: Is SNOMED CT Growing Straight?
title_fullStr Structural Patterns under X-Rays: Is SNOMED CT Growing Straight?
title_full_unstemmed Structural Patterns under X-Rays: Is SNOMED CT Growing Straight?
title_short Structural Patterns under X-Rays: Is SNOMED CT Growing Straight?
title_sort structural patterns under x-rays: is snomed ct growing straight?
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5094788/
https://www.ncbi.nlm.nih.gov/pubmed/27812127
http://dx.doi.org/10.1371/journal.pone.0165619
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