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An open-hardware platform for optogenetics and photobiology

In optogenetics, researchers use light and genetically encoded photoreceptors to control biological processes with unmatched precision. However, outside of neuroscience, the impact of optogenetics has been limited by a lack of user-friendly, flexible, accessible hardware. Here, we engineer the Light...

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Autores principales: Gerhardt, Karl P., Olson, Evan J., Castillo-Hair, Sebastian M., Hartsough, Lucas A., Landry, Brian P., Ekness, Felix, Yokoo, Rayka, Gomez, Eric J., Ramakrishnan, Prabha, Suh, Junghae, Savage, David F., Tabor, Jeffrey J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5096413/
https://www.ncbi.nlm.nih.gov/pubmed/27805047
http://dx.doi.org/10.1038/srep35363
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author Gerhardt, Karl P.
Olson, Evan J.
Castillo-Hair, Sebastian M.
Hartsough, Lucas A.
Landry, Brian P.
Ekness, Felix
Yokoo, Rayka
Gomez, Eric J.
Ramakrishnan, Prabha
Suh, Junghae
Savage, David F.
Tabor, Jeffrey J.
author_facet Gerhardt, Karl P.
Olson, Evan J.
Castillo-Hair, Sebastian M.
Hartsough, Lucas A.
Landry, Brian P.
Ekness, Felix
Yokoo, Rayka
Gomez, Eric J.
Ramakrishnan, Prabha
Suh, Junghae
Savage, David F.
Tabor, Jeffrey J.
author_sort Gerhardt, Karl P.
collection PubMed
description In optogenetics, researchers use light and genetically encoded photoreceptors to control biological processes with unmatched precision. However, outside of neuroscience, the impact of optogenetics has been limited by a lack of user-friendly, flexible, accessible hardware. Here, we engineer the Light Plate Apparatus (LPA), a device that can deliver two independent 310 to 1550 nm light signals to each well of a 24-well plate with intensity control over three orders of magnitude and millisecond resolution. Signals are programmed using an intuitive web tool named Iris. All components can be purchased for under $400 and the device can be assembled and calibrated by a non-expert in one day. We use the LPA to precisely control gene expression from blue, green, and red light responsive optogenetic tools in bacteria, yeast, and mammalian cells and simplify the entrainment of cyanobacterial circadian rhythm. The LPA dramatically reduces the entry barrier to optogenetics and photobiology experiments.
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spelling pubmed-50964132016-11-10 An open-hardware platform for optogenetics and photobiology Gerhardt, Karl P. Olson, Evan J. Castillo-Hair, Sebastian M. Hartsough, Lucas A. Landry, Brian P. Ekness, Felix Yokoo, Rayka Gomez, Eric J. Ramakrishnan, Prabha Suh, Junghae Savage, David F. Tabor, Jeffrey J. Sci Rep Article In optogenetics, researchers use light and genetically encoded photoreceptors to control biological processes with unmatched precision. However, outside of neuroscience, the impact of optogenetics has been limited by a lack of user-friendly, flexible, accessible hardware. Here, we engineer the Light Plate Apparatus (LPA), a device that can deliver two independent 310 to 1550 nm light signals to each well of a 24-well plate with intensity control over three orders of magnitude and millisecond resolution. Signals are programmed using an intuitive web tool named Iris. All components can be purchased for under $400 and the device can be assembled and calibrated by a non-expert in one day. We use the LPA to precisely control gene expression from blue, green, and red light responsive optogenetic tools in bacteria, yeast, and mammalian cells and simplify the entrainment of cyanobacterial circadian rhythm. The LPA dramatically reduces the entry barrier to optogenetics and photobiology experiments. Nature Publishing Group 2016-11-02 /pmc/articles/PMC5096413/ /pubmed/27805047 http://dx.doi.org/10.1038/srep35363 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Gerhardt, Karl P.
Olson, Evan J.
Castillo-Hair, Sebastian M.
Hartsough, Lucas A.
Landry, Brian P.
Ekness, Felix
Yokoo, Rayka
Gomez, Eric J.
Ramakrishnan, Prabha
Suh, Junghae
Savage, David F.
Tabor, Jeffrey J.
An open-hardware platform for optogenetics and photobiology
title An open-hardware platform for optogenetics and photobiology
title_full An open-hardware platform for optogenetics and photobiology
title_fullStr An open-hardware platform for optogenetics and photobiology
title_full_unstemmed An open-hardware platform for optogenetics and photobiology
title_short An open-hardware platform for optogenetics and photobiology
title_sort open-hardware platform for optogenetics and photobiology
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5096413/
https://www.ncbi.nlm.nih.gov/pubmed/27805047
http://dx.doi.org/10.1038/srep35363
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