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Insights into Brain Architectures from the Homological Scaffolds of Functional Connectivity Networks
In recent years, the application of network analysis to neuroimaging data has provided useful insights about the brain's functional and structural organization in both health and disease. This has proven a significant paradigm shift from the study of individual brain regions in isolation. Graph...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5099524/ https://www.ncbi.nlm.nih.gov/pubmed/27877115 http://dx.doi.org/10.3389/fnsys.2016.00085 |
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author | Lord, Louis-David Expert, Paul Fernandes, Henrique M. Petri, Giovanni Van Hartevelt, Tim J. Vaccarino, Francesco Deco, Gustavo Turkheimer, Federico Kringelbach, Morten L. |
author_facet | Lord, Louis-David Expert, Paul Fernandes, Henrique M. Petri, Giovanni Van Hartevelt, Tim J. Vaccarino, Francesco Deco, Gustavo Turkheimer, Federico Kringelbach, Morten L. |
author_sort | Lord, Louis-David |
collection | PubMed |
description | In recent years, the application of network analysis to neuroimaging data has provided useful insights about the brain's functional and structural organization in both health and disease. This has proven a significant paradigm shift from the study of individual brain regions in isolation. Graph-based models of the brain consist of vertices, which represent distinct brain areas, and edges which encode the presence (or absence) of a structural or functional relationship between each pair of vertices. By definition, any graph metric will be defined upon this dyadic representation of the brain activity. It is however unclear to what extent these dyadic relationships can capture the brain's complex functional architecture and the encoding of information in distributed networks. Moreover, because network representations of global brain activity are derived from measures that have a continuous response (i.e., interregional BOLD signals), it is methodologically complex to characterize the architecture of functional networks using traditional graph-based approaches. In the present study, we investigate the relationship between standard network metrics computed from dyadic interactions in a functional network, and a metric defined on the persistence homological scaffold of the network, which is a summary of the persistent homology structure of resting-state fMRI data. The persistence homological scaffold is a summary network that differs in important ways from the standard network representations of functional neuroimaging data: (i) it is constructed using the information from all edge weights comprised in the original network without applying an ad hoc threshold and (ii) as a summary of persistent homology, it considers the contributions of simplicial structures to the network organization rather than dyadic edge-vertices interactions. We investigated the information domain captured by the persistence homological scaffold by computing the strength of each node in the scaffold and comparing it to local graph metrics traditionally employed in neuroimaging studies. We conclude that the persistence scaffold enables the identification of network elements that may support the functional integration of information across distributed brain networks. |
format | Online Article Text |
id | pubmed-5099524 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-50995242016-11-22 Insights into Brain Architectures from the Homological Scaffolds of Functional Connectivity Networks Lord, Louis-David Expert, Paul Fernandes, Henrique M. Petri, Giovanni Van Hartevelt, Tim J. Vaccarino, Francesco Deco, Gustavo Turkheimer, Federico Kringelbach, Morten L. Front Syst Neurosci Neuroscience In recent years, the application of network analysis to neuroimaging data has provided useful insights about the brain's functional and structural organization in both health and disease. This has proven a significant paradigm shift from the study of individual brain regions in isolation. Graph-based models of the brain consist of vertices, which represent distinct brain areas, and edges which encode the presence (or absence) of a structural or functional relationship between each pair of vertices. By definition, any graph metric will be defined upon this dyadic representation of the brain activity. It is however unclear to what extent these dyadic relationships can capture the brain's complex functional architecture and the encoding of information in distributed networks. Moreover, because network representations of global brain activity are derived from measures that have a continuous response (i.e., interregional BOLD signals), it is methodologically complex to characterize the architecture of functional networks using traditional graph-based approaches. In the present study, we investigate the relationship between standard network metrics computed from dyadic interactions in a functional network, and a metric defined on the persistence homological scaffold of the network, which is a summary of the persistent homology structure of resting-state fMRI data. The persistence homological scaffold is a summary network that differs in important ways from the standard network representations of functional neuroimaging data: (i) it is constructed using the information from all edge weights comprised in the original network without applying an ad hoc threshold and (ii) as a summary of persistent homology, it considers the contributions of simplicial structures to the network organization rather than dyadic edge-vertices interactions. We investigated the information domain captured by the persistence homological scaffold by computing the strength of each node in the scaffold and comparing it to local graph metrics traditionally employed in neuroimaging studies. We conclude that the persistence scaffold enables the identification of network elements that may support the functional integration of information across distributed brain networks. Frontiers Media S.A. 2016-11-08 /pmc/articles/PMC5099524/ /pubmed/27877115 http://dx.doi.org/10.3389/fnsys.2016.00085 Text en Copyright © 2016 Lord, Expert, Fernandes, Petri, Van Hartevelt, Vaccarino, Deco, Turkheimer and Kringelbach. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Lord, Louis-David Expert, Paul Fernandes, Henrique M. Petri, Giovanni Van Hartevelt, Tim J. Vaccarino, Francesco Deco, Gustavo Turkheimer, Federico Kringelbach, Morten L. Insights into Brain Architectures from the Homological Scaffolds of Functional Connectivity Networks |
title | Insights into Brain Architectures from the Homological Scaffolds of Functional Connectivity Networks |
title_full | Insights into Brain Architectures from the Homological Scaffolds of Functional Connectivity Networks |
title_fullStr | Insights into Brain Architectures from the Homological Scaffolds of Functional Connectivity Networks |
title_full_unstemmed | Insights into Brain Architectures from the Homological Scaffolds of Functional Connectivity Networks |
title_short | Insights into Brain Architectures from the Homological Scaffolds of Functional Connectivity Networks |
title_sort | insights into brain architectures from the homological scaffolds of functional connectivity networks |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5099524/ https://www.ncbi.nlm.nih.gov/pubmed/27877115 http://dx.doi.org/10.3389/fnsys.2016.00085 |
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