Cargando…
Two draft genome sequences of Pseudomonas jessenii strains isolated from a copper contaminated site in Denmark
Pseudomonas jessenii C2 and Pseudomonas jessenii H16 were isolated from low-Cu and high-Cu industrially contaminated soil, respectively. P. jessenii H16 displayed significant resistance to copper when compared to P. jessenii C2. Here we describe genome sequences and interesting features of these two...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5100093/ https://www.ncbi.nlm.nih.gov/pubmed/27833718 http://dx.doi.org/10.1186/s40793-016-0200-8 |
_version_ | 1782466067119996928 |
---|---|
author | Qin, Yanan Wang, Dan Brandt, Kristian K. Rensing, Christopher |
author_facet | Qin, Yanan Wang, Dan Brandt, Kristian K. Rensing, Christopher |
author_sort | Qin, Yanan |
collection | PubMed |
description | Pseudomonas jessenii C2 and Pseudomonas jessenii H16 were isolated from low-Cu and high-Cu industrially contaminated soil, respectively. P. jessenii H16 displayed significant resistance to copper when compared to P. jessenii C2. Here we describe genome sequences and interesting features of these two strains. The genome of P. jessenii C2 comprised 6,420,113 bp, with 5814 protein-coding genes and 67 RNA genes. P. jessenii H16 comprised 6,807,788 bp, with 5995 protein-coding genes and 70 RNA genes. Of special interest was a specific adaptation to this harsh copper-contaminated environment as P. jessenii H16 contained a novel putative copper resistance genomic island (GI) of around 50,000 bp. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-016-0200-8) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-5100093 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-51000932016-11-10 Two draft genome sequences of Pseudomonas jessenii strains isolated from a copper contaminated site in Denmark Qin, Yanan Wang, Dan Brandt, Kristian K. Rensing, Christopher Stand Genomic Sci Short Genome Report Pseudomonas jessenii C2 and Pseudomonas jessenii H16 were isolated from low-Cu and high-Cu industrially contaminated soil, respectively. P. jessenii H16 displayed significant resistance to copper when compared to P. jessenii C2. Here we describe genome sequences and interesting features of these two strains. The genome of P. jessenii C2 comprised 6,420,113 bp, with 5814 protein-coding genes and 67 RNA genes. P. jessenii H16 comprised 6,807,788 bp, with 5995 protein-coding genes and 70 RNA genes. Of special interest was a specific adaptation to this harsh copper-contaminated environment as P. jessenii H16 contained a novel putative copper resistance genomic island (GI) of around 50,000 bp. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-016-0200-8) contains supplementary material, which is available to authorized users. BioMed Central 2016-11-03 /pmc/articles/PMC5100093/ /pubmed/27833718 http://dx.doi.org/10.1186/s40793-016-0200-8 Text en © The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Qin, Yanan Wang, Dan Brandt, Kristian K. Rensing, Christopher Two draft genome sequences of Pseudomonas jessenii strains isolated from a copper contaminated site in Denmark |
title | Two draft genome sequences of Pseudomonas jessenii strains isolated from a copper contaminated site in Denmark |
title_full | Two draft genome sequences of Pseudomonas jessenii strains isolated from a copper contaminated site in Denmark |
title_fullStr | Two draft genome sequences of Pseudomonas jessenii strains isolated from a copper contaminated site in Denmark |
title_full_unstemmed | Two draft genome sequences of Pseudomonas jessenii strains isolated from a copper contaminated site in Denmark |
title_short | Two draft genome sequences of Pseudomonas jessenii strains isolated from a copper contaminated site in Denmark |
title_sort | two draft genome sequences of pseudomonas jessenii strains isolated from a copper contaminated site in denmark |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5100093/ https://www.ncbi.nlm.nih.gov/pubmed/27833718 http://dx.doi.org/10.1186/s40793-016-0200-8 |
work_keys_str_mv | AT qinyanan twodraftgenomesequencesofpseudomonasjesseniistrainsisolatedfromacoppercontaminatedsiteindenmark AT wangdan twodraftgenomesequencesofpseudomonasjesseniistrainsisolatedfromacoppercontaminatedsiteindenmark AT brandtkristiank twodraftgenomesequencesofpseudomonasjesseniistrainsisolatedfromacoppercontaminatedsiteindenmark AT rensingchristopher twodraftgenomesequencesofpseudomonasjesseniistrainsisolatedfromacoppercontaminatedsiteindenmark |