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MR Spectroscopy in Prostate Cancer: New Algorithms to Optimize Metabolite Quantification

Prostate cancer (PCa) is the most common non-cutaneous cancer in male subjects and the second leading cause of cancer-related death in developed countries. The necessity of a non-invasive technique for the diagnosis of PCa in early stage has grown through years. Proton magnetic resonance spectroscop...

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Autores principales: Bellomo, Giovanni, Marcocci, Francesco, Bianchini, David, Mezzenga, Emilio, D’Errico, Vincenzo, Menghi, Enrico, Zannoli, Romano, Sarnelli, Anna
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5104319/
https://www.ncbi.nlm.nih.gov/pubmed/27832096
http://dx.doi.org/10.1371/journal.pone.0165730
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author Bellomo, Giovanni
Marcocci, Francesco
Bianchini, David
Mezzenga, Emilio
D’Errico, Vincenzo
Menghi, Enrico
Zannoli, Romano
Sarnelli, Anna
author_facet Bellomo, Giovanni
Marcocci, Francesco
Bianchini, David
Mezzenga, Emilio
D’Errico, Vincenzo
Menghi, Enrico
Zannoli, Romano
Sarnelli, Anna
author_sort Bellomo, Giovanni
collection PubMed
description Prostate cancer (PCa) is the most common non-cutaneous cancer in male subjects and the second leading cause of cancer-related death in developed countries. The necessity of a non-invasive technique for the diagnosis of PCa in early stage has grown through years. Proton magnetic resonance spectroscopy ((1)H-MRS) and proton magnetic resonance spectroscopy imaging ((1)H-MRSI) are advanced magnetic resonance techniques that can mark the presence of metabolites such as citrate, choline, creatine and polyamines in a selected voxel, or in an array of voxels (in MRSI) inside prostatic tissue. Abundance or lack of these metabolites can discriminate between pathological and healthy tissue. Although the use of magnetic resonance spectroscopy (MRS) is well established in brain and liver with dedicated software for spectral analysis, quantification of metabolites in prostate can be very difficult to achieve, due to poor signal to noise ratio and strong J-coupling of the citrate. The aim of this work is to develop a software prototype for automatic quantification of citrate, choline and creatine in prostate. Its core is an original fitting routine that makes use of a fixed step gradient descent minimization algorithm (FSGD) and MRS simulations developed with the GAMMA libraries in C++. The accurate simulation of the citrate spin systems allows to predict the correct J-modulation under different NMR sequences and under different coupling parameters. The accuracy of the quantifications was tested on measurements performed on a Philips Ingenia 3T scanner using homemade phantoms. Some acquisitions in healthy volunteers have been also carried out to test the software performance in vivo.
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spelling pubmed-51043192016-12-08 MR Spectroscopy in Prostate Cancer: New Algorithms to Optimize Metabolite Quantification Bellomo, Giovanni Marcocci, Francesco Bianchini, David Mezzenga, Emilio D’Errico, Vincenzo Menghi, Enrico Zannoli, Romano Sarnelli, Anna PLoS One Research Article Prostate cancer (PCa) is the most common non-cutaneous cancer in male subjects and the second leading cause of cancer-related death in developed countries. The necessity of a non-invasive technique for the diagnosis of PCa in early stage has grown through years. Proton magnetic resonance spectroscopy ((1)H-MRS) and proton magnetic resonance spectroscopy imaging ((1)H-MRSI) are advanced magnetic resonance techniques that can mark the presence of metabolites such as citrate, choline, creatine and polyamines in a selected voxel, or in an array of voxels (in MRSI) inside prostatic tissue. Abundance or lack of these metabolites can discriminate between pathological and healthy tissue. Although the use of magnetic resonance spectroscopy (MRS) is well established in brain and liver with dedicated software for spectral analysis, quantification of metabolites in prostate can be very difficult to achieve, due to poor signal to noise ratio and strong J-coupling of the citrate. The aim of this work is to develop a software prototype for automatic quantification of citrate, choline and creatine in prostate. Its core is an original fitting routine that makes use of a fixed step gradient descent minimization algorithm (FSGD) and MRS simulations developed with the GAMMA libraries in C++. The accurate simulation of the citrate spin systems allows to predict the correct J-modulation under different NMR sequences and under different coupling parameters. The accuracy of the quantifications was tested on measurements performed on a Philips Ingenia 3T scanner using homemade phantoms. Some acquisitions in healthy volunteers have been also carried out to test the software performance in vivo. Public Library of Science 2016-11-10 /pmc/articles/PMC5104319/ /pubmed/27832096 http://dx.doi.org/10.1371/journal.pone.0165730 Text en © 2016 Bellomo et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Bellomo, Giovanni
Marcocci, Francesco
Bianchini, David
Mezzenga, Emilio
D’Errico, Vincenzo
Menghi, Enrico
Zannoli, Romano
Sarnelli, Anna
MR Spectroscopy in Prostate Cancer: New Algorithms to Optimize Metabolite Quantification
title MR Spectroscopy in Prostate Cancer: New Algorithms to Optimize Metabolite Quantification
title_full MR Spectroscopy in Prostate Cancer: New Algorithms to Optimize Metabolite Quantification
title_fullStr MR Spectroscopy in Prostate Cancer: New Algorithms to Optimize Metabolite Quantification
title_full_unstemmed MR Spectroscopy in Prostate Cancer: New Algorithms to Optimize Metabolite Quantification
title_short MR Spectroscopy in Prostate Cancer: New Algorithms to Optimize Metabolite Quantification
title_sort mr spectroscopy in prostate cancer: new algorithms to optimize metabolite quantification
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5104319/
https://www.ncbi.nlm.nih.gov/pubmed/27832096
http://dx.doi.org/10.1371/journal.pone.0165730
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