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Microsatellite primers for the rare shrub Acacia adinophylla (Fabaceae)(1)

PREMISE OF THE STUDY: Microsatellite primers were developed for the rare shrub Acacia adinophylla (Fabaceae) to assess genetic diversity and its spatial structuring. METHODS AND RESULTS: Shotgun sequencing on an Illumina MiSeq produced 6,372,575 reads. Using the QDD pipeline, we designed 60 primer p...

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Autores principales: Nevill, Paul G., Wardell-Johnson, Grant
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5104529/
https://www.ncbi.nlm.nih.gov/pubmed/27843728
http://dx.doi.org/10.3732/apps.1600084
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author Nevill, Paul G.
Wardell-Johnson, Grant
author_facet Nevill, Paul G.
Wardell-Johnson, Grant
author_sort Nevill, Paul G.
collection PubMed
description PREMISE OF THE STUDY: Microsatellite primers were developed for the rare shrub Acacia adinophylla (Fabaceae) to assess genetic diversity and its spatial structuring. METHODS AND RESULTS: Shotgun sequencing on an Illumina MiSeq produced 6,372,575 reads. Using the QDD pipeline, we designed 60 primer pairs, which were screened using PCR. Seventeen loci were developed, of which 12 loci were identified that were polymorphic, amplified reliably, and could be consistently scored. These loci were then screened for variation in individuals from three populations. The number of alleles observed for these 12 loci ranged from three to 18 and expected heterozygosity ranged from 0.13 to 0.85. CONCLUSIONS: These markers will enable the quantification of genetic impact of proposed mining activities on the short-range endemic Acacia adinophylla.
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spelling pubmed-51045292016-11-14 Microsatellite primers for the rare shrub Acacia adinophylla (Fabaceae)(1) Nevill, Paul G. Wardell-Johnson, Grant Appl Plant Sci Primer Note PREMISE OF THE STUDY: Microsatellite primers were developed for the rare shrub Acacia adinophylla (Fabaceae) to assess genetic diversity and its spatial structuring. METHODS AND RESULTS: Shotgun sequencing on an Illumina MiSeq produced 6,372,575 reads. Using the QDD pipeline, we designed 60 primer pairs, which were screened using PCR. Seventeen loci were developed, of which 12 loci were identified that were polymorphic, amplified reliably, and could be consistently scored. These loci were then screened for variation in individuals from three populations. The number of alleles observed for these 12 loci ranged from three to 18 and expected heterozygosity ranged from 0.13 to 0.85. CONCLUSIONS: These markers will enable the quantification of genetic impact of proposed mining activities on the short-range endemic Acacia adinophylla. Botanical Society of America 2016-11-03 /pmc/articles/PMC5104529/ /pubmed/27843728 http://dx.doi.org/10.3732/apps.1600084 Text en © 2016 Nevill and Wardell-Johnson. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Nevill, Paul G.
Wardell-Johnson, Grant
Microsatellite primers for the rare shrub Acacia adinophylla (Fabaceae)(1)
title Microsatellite primers for the rare shrub Acacia adinophylla (Fabaceae)(1)
title_full Microsatellite primers for the rare shrub Acacia adinophylla (Fabaceae)(1)
title_fullStr Microsatellite primers for the rare shrub Acacia adinophylla (Fabaceae)(1)
title_full_unstemmed Microsatellite primers for the rare shrub Acacia adinophylla (Fabaceae)(1)
title_short Microsatellite primers for the rare shrub Acacia adinophylla (Fabaceae)(1)
title_sort microsatellite primers for the rare shrub acacia adinophylla (fabaceae)(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5104529/
https://www.ncbi.nlm.nih.gov/pubmed/27843728
http://dx.doi.org/10.3732/apps.1600084
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