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Development and characterization of microsatellite loci for Lindera glauca (Lauraceae)(1)
PREMISE OF THE STUDY: Microsatellite primers were developed to investigate population genetic structure in Lindera glauca (Lauraceae). METHODS AND RESULTS: Twenty-five microsatellite primers were developed and optimized for L. glauca using Illumina’s Solexa sequencing technology. These novel primers...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5104530/ https://www.ncbi.nlm.nih.gov/pubmed/27843729 http://dx.doi.org/10.3732/apps.1600088 |
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author | Xiong, Biao Dong, Shubin Qi, Ji Zhang, Limei Ha, Denglong Ju, Yuxi Zhang, Zhixiang |
author_facet | Xiong, Biao Dong, Shubin Qi, Ji Zhang, Limei Ha, Denglong Ju, Yuxi Zhang, Zhixiang |
author_sort | Xiong, Biao |
collection | PubMed |
description | PREMISE OF THE STUDY: Microsatellite primers were developed to investigate population genetic structure in Lindera glauca (Lauraceae). METHODS AND RESULTS: Twenty-five microsatellite primers were developed and optimized for L. glauca using Illumina’s Solexa sequencing technology. These novel primers were found to be polymorphic in nine wild L. glauca populations with 81 total alleles confirmed and genotyped via capillary gel electrophoresis. The total number of alleles, observed heterozygosity, and expected heterozygosity for each population ranged from one to four, from 0.00 to 0.90, and from 0.00 to 0.79, respectively. In addition, the 25 primers were tested in 10 additional individuals of the related species L. communis, and all but four markers showed good amplification results. CONCLUSIONS: This set of microsatellite primers is the first specifically developed for L. glauca and will facilitate studies of genetic diversity and evolution among populations of this species. |
format | Online Article Text |
id | pubmed-5104530 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-51045302016-11-14 Development and characterization of microsatellite loci for Lindera glauca (Lauraceae)(1) Xiong, Biao Dong, Shubin Qi, Ji Zhang, Limei Ha, Denglong Ju, Yuxi Zhang, Zhixiang Appl Plant Sci Primer Note PREMISE OF THE STUDY: Microsatellite primers were developed to investigate population genetic structure in Lindera glauca (Lauraceae). METHODS AND RESULTS: Twenty-five microsatellite primers were developed and optimized for L. glauca using Illumina’s Solexa sequencing technology. These novel primers were found to be polymorphic in nine wild L. glauca populations with 81 total alleles confirmed and genotyped via capillary gel electrophoresis. The total number of alleles, observed heterozygosity, and expected heterozygosity for each population ranged from one to four, from 0.00 to 0.90, and from 0.00 to 0.79, respectively. In addition, the 25 primers were tested in 10 additional individuals of the related species L. communis, and all but four markers showed good amplification results. CONCLUSIONS: This set of microsatellite primers is the first specifically developed for L. glauca and will facilitate studies of genetic diversity and evolution among populations of this species. Botanical Society of America 2016-11-04 /pmc/articles/PMC5104530/ /pubmed/27843729 http://dx.doi.org/10.3732/apps.1600088 Text en © 2016 Xiong et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note Xiong, Biao Dong, Shubin Qi, Ji Zhang, Limei Ha, Denglong Ju, Yuxi Zhang, Zhixiang Development and characterization of microsatellite loci for Lindera glauca (Lauraceae)(1) |
title | Development and characterization of microsatellite loci for Lindera glauca (Lauraceae)(1) |
title_full | Development and characterization of microsatellite loci for Lindera glauca (Lauraceae)(1) |
title_fullStr | Development and characterization of microsatellite loci for Lindera glauca (Lauraceae)(1) |
title_full_unstemmed | Development and characterization of microsatellite loci for Lindera glauca (Lauraceae)(1) |
title_short | Development and characterization of microsatellite loci for Lindera glauca (Lauraceae)(1) |
title_sort | development and characterization of microsatellite loci for lindera glauca (lauraceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5104530/ https://www.ncbi.nlm.nih.gov/pubmed/27843729 http://dx.doi.org/10.3732/apps.1600088 |
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