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Predicted rarity‐weighted richness, a new tool to prioritize sites for species representation
Lack of biodiversity data is a major impediment to prioritizing sites for species representation. Because comprehensive species data are not available in any planning area, planners often use surrogates (such as vegetation communities, or mapped occurrences of a well‐inventoried taxon) to prioritize...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5108262/ https://www.ncbi.nlm.nih.gov/pubmed/27878082 http://dx.doi.org/10.1002/ece3.2544 |
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author | Albuquerque, Fábio Beier, Paul |
author_facet | Albuquerque, Fábio Beier, Paul |
author_sort | Albuquerque, Fábio |
collection | PubMed |
description | Lack of biodiversity data is a major impediment to prioritizing sites for species representation. Because comprehensive species data are not available in any planning area, planners often use surrogates (such as vegetation communities, or mapped occurrences of a well‐inventoried taxon) to prioritize sites. We propose and demonstrate the effectiveness of predicted rarity‐weighted richness (PRWR) as a surrogate in situations where species inventories may be available for a portion of the planning area. Use of PRWR as a surrogate involves several steps. First, rarity‐weighted richness (RWR) is calculated from species inventories for a q% subset of sites. Then random forest models are used to model RWR as a function of freely available environmental variables for that q% subset. This function is then used to calculate PRWR for all sites (including those for which no species inventories are available), and PRWR is used to prioritize all sites. We tested PRWR on plant and bird datasets, using the species accumulation index to measure efficiency of PRWR. Sites with the highest PRWR represented species with median efficiency of 56% (range 32%–77% across six datasets) when q = 20%, and with median efficiency of 39% (range 20%–63%) when q = 10%. An efficiency of 56% means that selecting sites in order of PRWR rank was 56% as effective as having full knowledge of species distributions in PRWR's ability to improve on the number of species represented in the same number of randomly selected sites. Our results suggest that PRWR may be able to help prioritize sites to represent species if a planner has species inventories for 10%–20% of the sites in the planning area. |
format | Online Article Text |
id | pubmed-5108262 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-51082622016-11-22 Predicted rarity‐weighted richness, a new tool to prioritize sites for species representation Albuquerque, Fábio Beier, Paul Ecol Evol Original Research Lack of biodiversity data is a major impediment to prioritizing sites for species representation. Because comprehensive species data are not available in any planning area, planners often use surrogates (such as vegetation communities, or mapped occurrences of a well‐inventoried taxon) to prioritize sites. We propose and demonstrate the effectiveness of predicted rarity‐weighted richness (PRWR) as a surrogate in situations where species inventories may be available for a portion of the planning area. Use of PRWR as a surrogate involves several steps. First, rarity‐weighted richness (RWR) is calculated from species inventories for a q% subset of sites. Then random forest models are used to model RWR as a function of freely available environmental variables for that q% subset. This function is then used to calculate PRWR for all sites (including those for which no species inventories are available), and PRWR is used to prioritize all sites. We tested PRWR on plant and bird datasets, using the species accumulation index to measure efficiency of PRWR. Sites with the highest PRWR represented species with median efficiency of 56% (range 32%–77% across six datasets) when q = 20%, and with median efficiency of 39% (range 20%–63%) when q = 10%. An efficiency of 56% means that selecting sites in order of PRWR rank was 56% as effective as having full knowledge of species distributions in PRWR's ability to improve on the number of species represented in the same number of randomly selected sites. Our results suggest that PRWR may be able to help prioritize sites to represent species if a planner has species inventories for 10%–20% of the sites in the planning area. John Wiley and Sons Inc. 2016-10-17 /pmc/articles/PMC5108262/ /pubmed/27878082 http://dx.doi.org/10.1002/ece3.2544 Text en © 2016 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Albuquerque, Fábio Beier, Paul Predicted rarity‐weighted richness, a new tool to prioritize sites for species representation |
title | Predicted rarity‐weighted richness, a new tool to prioritize sites for species representation |
title_full | Predicted rarity‐weighted richness, a new tool to prioritize sites for species representation |
title_fullStr | Predicted rarity‐weighted richness, a new tool to prioritize sites for species representation |
title_full_unstemmed | Predicted rarity‐weighted richness, a new tool to prioritize sites for species representation |
title_short | Predicted rarity‐weighted richness, a new tool to prioritize sites for species representation |
title_sort | predicted rarity‐weighted richness, a new tool to prioritize sites for species representation |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5108262/ https://www.ncbi.nlm.nih.gov/pubmed/27878082 http://dx.doi.org/10.1002/ece3.2544 |
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