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Classifying Cognitive Profiles Using Machine Learning with Privileged Information in Mild Cognitive Impairment
Early diagnosis of dementia is critical for assessing disease progression and potential treatment. State-or-the-art machine learning techniques have been increasingly employed to take on this diagnostic task. In this study, we employed Generalized Matrix Learning Vector Quantization (GMLVQ) classifi...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5112260/ https://www.ncbi.nlm.nih.gov/pubmed/27909405 http://dx.doi.org/10.3389/fncom.2016.00117 |
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author | Alahmadi, Hanin H. Shen, Yuan Fouad, Shereen Luft, Caroline Di B. Bentham, Peter Kourtzi, Zoe Tino, Peter |
author_facet | Alahmadi, Hanin H. Shen, Yuan Fouad, Shereen Luft, Caroline Di B. Bentham, Peter Kourtzi, Zoe Tino, Peter |
author_sort | Alahmadi, Hanin H. |
collection | PubMed |
description | Early diagnosis of dementia is critical for assessing disease progression and potential treatment. State-or-the-art machine learning techniques have been increasingly employed to take on this diagnostic task. In this study, we employed Generalized Matrix Learning Vector Quantization (GMLVQ) classifiers to discriminate patients with Mild Cognitive Impairment (MCI) from healthy controls based on their cognitive skills. Further, we adopted a “Learning with privileged information” approach to combine cognitive and fMRI data for the classification task. The resulting classifier operates solely on the cognitive data while it incorporates the fMRI data as privileged information (PI) during training. This novel classifier is of practical use as the collection of brain imaging data is not always possible with patients and older participants. MCI patients and healthy age-matched controls were trained to extract structure from temporal sequences. We ask whether machine learning classifiers can be used to discriminate patients from controls and whether differences between these groups relate to individual cognitive profiles. To this end, we tested participants in four cognitive tasks: working memory, cognitive inhibition, divided attention, and selective attention. We also collected fMRI data before and after training on a probabilistic sequence learning task and extracted fMRI responses and connectivity as features for machine learning classifiers. Our results show that the PI guided GMLVQ classifiers outperform the baseline classifier that only used the cognitive data. In addition, we found that for the baseline classifier, divided attention is the only relevant cognitive feature. When PI was incorporated, divided attention remained the most relevant feature while cognitive inhibition became also relevant for the task. Interestingly, this analysis for the fMRI GMLVQ classifier suggests that (1) when overall fMRI signal is used as inputs to the classifier, the post-training session is most relevant; and (2) when the graph feature reflecting underlying spatiotemporal fMRI pattern is used, the pre-training session is most relevant. Taken together these results suggest that brain connectivity before training and overall fMRI signal after training are both diagnostic of cognitive skills in MCI. |
format | Online Article Text |
id | pubmed-5112260 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-51122602016-12-01 Classifying Cognitive Profiles Using Machine Learning with Privileged Information in Mild Cognitive Impairment Alahmadi, Hanin H. Shen, Yuan Fouad, Shereen Luft, Caroline Di B. Bentham, Peter Kourtzi, Zoe Tino, Peter Front Comput Neurosci Neuroscience Early diagnosis of dementia is critical for assessing disease progression and potential treatment. State-or-the-art machine learning techniques have been increasingly employed to take on this diagnostic task. In this study, we employed Generalized Matrix Learning Vector Quantization (GMLVQ) classifiers to discriminate patients with Mild Cognitive Impairment (MCI) from healthy controls based on their cognitive skills. Further, we adopted a “Learning with privileged information” approach to combine cognitive and fMRI data for the classification task. The resulting classifier operates solely on the cognitive data while it incorporates the fMRI data as privileged information (PI) during training. This novel classifier is of practical use as the collection of brain imaging data is not always possible with patients and older participants. MCI patients and healthy age-matched controls were trained to extract structure from temporal sequences. We ask whether machine learning classifiers can be used to discriminate patients from controls and whether differences between these groups relate to individual cognitive profiles. To this end, we tested participants in four cognitive tasks: working memory, cognitive inhibition, divided attention, and selective attention. We also collected fMRI data before and after training on a probabilistic sequence learning task and extracted fMRI responses and connectivity as features for machine learning classifiers. Our results show that the PI guided GMLVQ classifiers outperform the baseline classifier that only used the cognitive data. In addition, we found that for the baseline classifier, divided attention is the only relevant cognitive feature. When PI was incorporated, divided attention remained the most relevant feature while cognitive inhibition became also relevant for the task. Interestingly, this analysis for the fMRI GMLVQ classifier suggests that (1) when overall fMRI signal is used as inputs to the classifier, the post-training session is most relevant; and (2) when the graph feature reflecting underlying spatiotemporal fMRI pattern is used, the pre-training session is most relevant. Taken together these results suggest that brain connectivity before training and overall fMRI signal after training are both diagnostic of cognitive skills in MCI. Frontiers Media S.A. 2016-11-17 /pmc/articles/PMC5112260/ /pubmed/27909405 http://dx.doi.org/10.3389/fncom.2016.00117 Text en Copyright © 2016 Alahmadi, Shen, Fouad, Luft, Bentham, Kourtzi and Tino. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Alahmadi, Hanin H. Shen, Yuan Fouad, Shereen Luft, Caroline Di B. Bentham, Peter Kourtzi, Zoe Tino, Peter Classifying Cognitive Profiles Using Machine Learning with Privileged Information in Mild Cognitive Impairment |
title | Classifying Cognitive Profiles Using Machine Learning with Privileged Information in Mild Cognitive Impairment |
title_full | Classifying Cognitive Profiles Using Machine Learning with Privileged Information in Mild Cognitive Impairment |
title_fullStr | Classifying Cognitive Profiles Using Machine Learning with Privileged Information in Mild Cognitive Impairment |
title_full_unstemmed | Classifying Cognitive Profiles Using Machine Learning with Privileged Information in Mild Cognitive Impairment |
title_short | Classifying Cognitive Profiles Using Machine Learning with Privileged Information in Mild Cognitive Impairment |
title_sort | classifying cognitive profiles using machine learning with privileged information in mild cognitive impairment |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5112260/ https://www.ncbi.nlm.nih.gov/pubmed/27909405 http://dx.doi.org/10.3389/fncom.2016.00117 |
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