Cargando…

Metabarcoding of Fecal Samples to Determine Herbivore Diets: A Case Study of the Endangered Pacific Pocket Mouse

Understanding the diet of an endangered species illuminates the animal’s ecology, habitat requirements, and conservation needs. However, direct observation of diet can be difficult, particularly for small, nocturnal animals such as the Pacific pocket mouse (Heteromyidae: Perognathus longimembris pac...

Descripción completa

Detalles Bibliográficos
Autores principales:	Iwanowicz, Deborah D., Vandergast, Amy G., Cornman, Robert S., Adams, Cynthia R., Kohn, Joshua R., Fisher, Robert N., Brehme, Cheryl S.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2016
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5112926/ https://www.ncbi.nlm.nih.gov/pubmed/27851756 http://dx.doi.org/10.1371/journal.pone.0165366

Ejemplares similares

Fecal metabarcoding of the endangered Pacific pocket mouse (Perognathus longimembris pacificus) reveals a diverse and forb rich diet that reflects local habitat availability
por: Vandergast, Amy G., et al.
Publicado: (2023)

Complete Genome Sequence of a Novel Aquareovirus That Infects the Endangered Fountain Darter, Etheostoma fonticola
por: Iwanowicz, Luke R., et al.
Publicado: (2016)

Metabarcoding of fecal DNA reveals the broad and flexible diet of a globally endangered bird
por: Tang, Keyi, et al.
Publicado: (2022)

Draft Genome Sequence of a Picorna-Like Virus Associated with Gill Tissue in Clinically Normal Brook Trout, Salvelinus fontinalis
por: Iwanowicz, Luke R., et al.
Publicado: (2017)

Evaluation of plant contamination in metabarcoding diet analysis of a herbivore
por: Ando, Haruko, et al.
Publicado: (2018)

Genome Sequences of 26 White Sucker Hepatitis B Virus Isolates from White Sucker, Catostomus commersonii, Inhabiting Transboundary Waters from Alberta, Canada, to the Great Lakes, USA
por: Adams, Cynthia R., et al.
Publicado: (2021)

Phylogeographic Genetic Diversity in the White Sucker Hepatitis B Virus across the Great Lakes Region and Alberta, Canada
por: Adams, Cynthia R., et al.
Publicado: (2021)

Diet of a rare herbivore based on DNA metabarcoding of feces: Selection, seasonality, and survival
por: Goldberg, Amanda R., et al.
Publicado: (2020)

Genomic evolution, recombination, and inter-strain diversity of chelonid alphaherpesvirus 5 from Florida and Hawaii green sea turtles with fibropapillomatosis
por: Morrison, Cheryl L., et al.
Publicado: (2018)

Molecular diet analysis of neotropical bats based on fecal DNA metabarcoding
por: Ingala, Melissa R., et al.
Publicado: (2021)

A Chromosome-Length Reference Genome for the Endangered Pacific Pocket Mouse Reveals Recent Inbreeding in a Historically Large Population
por: Wilder, Aryn P, et al.
Publicado: (2022)

DNA metabarcoding reveals the dietary composition in the endangered black-faced spoonbill
por: Huang, Pei-Yu, et al.
Publicado: (2021)

Draft Genome Sequence of an Adomavirus Associated with Raised Mucoid Skin Lesions on Smallmouth Bass (Micropterus dolomieu)
por: Iwanowicz, Luke R., et al.
Publicado: (2020)

Habitat suitability and herbivores determine reintroduction success of an endangered legume
por: Albrecht, Matthew A., et al.
Publicado: (2018)

Taxonomic Characterization of Honey Bee (Apis mellifera) Pollen Foraging Based on Non-Overlapping Paired-End Sequencing of Nuclear Ribosomal Loci
por: Cornman, R. Scott, et al.
Publicado: (2015)

Large-scale metabarcoding analysis of epipelagic and mesopelagic copepods in the Pacific
por: Hirai, Junya, et al.
Publicado: (2020)

DNA Metabarcoding Reveals Diet Overlap between the Endangered Walia Ibex and Domestic Goats - Implications for Conservation
por: Gebremedhin, Berihun, et al.
Publicado: (2016)

Assessment of the diet of the critically endangered northern hairy‐nosed wombat (Lasiorhinus krefftii) using DNA metabarcoding
por: Casey, Fiona, et al.
Publicado: (2023)

Using next generation sequencing of alpine plants to improve fecal metabarcoding diet analysis for Dall’s sheep
por: Williams, Kelly E., et al.
Publicado: (2021)

Revealing cryptic interactions between large mammalian herbivores and plant‐dwelling arthropods via DNA metabarcoding
por: Berman, Tali S., et al.
Publicado: (2021)

Metabarcoding Analysis of Harmful Algal Bloom Species in the Western Pacific Seamount Regions
por: Xu, Qing, et al.
Publicado: (2021)

Dietary characterization of the endangered salt marsh harvest mouse and sympatric rodents using DNA metabarcoding
por: Aylward, Cody M., et al.
Publicado: (2022)

DNA metabarcoding for diet analysis and biodiversity: A case study using the endangered Australian sea lion (Neophoca cinerea)
por: Berry, Tina E., et al.
Publicado: (2017)

Core fecal microbiota of domesticated herbivorous ruminant, hindgut fermenters, and monogastric animals
por: O’ Donnell, Michelle M., et al.
Publicado: (2017)

Selection of a marker gene to construct a reference library for wetland plants, and the application of metabarcoding to analyze the diet of wintering herbivorous waterbirds
por: Yang, Yuzhan, et al.
Publicado: (2016)

Comparison of the fecal microbiota of two monogastric herbivorous and five omnivorous mammals
por: Kobayashi, Rana, et al.
Publicado: (2020)

Predicting bycatch hotspots for endangered leatherback turtles on longlines in the Pacific Ocean
por: Roe, John H., et al.
Publicado: (2014)

Development and validation of a multi-locus DNA metabarcoding method to identify endangered species in complex samples
por: Arulandhu, Alfred J., et al.
Publicado: (2017)

DNA metabarcoding suggests adaptive seasonal variation of individual trophic traits in a critically endangered fish
por: Villsen, Kurt, et al.
Publicado: (2022)

Estimating the genetic diversity of Pacific salmon and trout using multigene eDNA metabarcoding
por: Weitemier, Kevin, et al.
Publicado: (2021)

Effectiveness of blocking primers and a peptide nucleic acid (PNA) clamp for 18S metabarcoding dietary analysis of herbivorous fish
por: Homma, Chiho, et al.
Publicado: (2022)

Characterization of a Novel Hepadnavirus in the White Sucker (Catostomus commersonii) from the Great Lakes Region of the United States
por: Hahn, Cassidy M., et al.
Publicado: (2015)

Anachronic Fruit Traits and Natural History Suggest Extinct Megafauna Herbivores as the Dispersers of an Endangered Tree
por: Muñoz-Concha, Diego, et al.
Publicado: (2020)

Combining genetic and demographic monitoring better informs conservation of an endangered urban snake
por: Wood, Dustin A., et al.
Publicado: (2020)

A pipeline for metabarcoding and diet analysis from fecal samples developed for a small semi-aquatic mammal
por: Hawlitschek, Oliver, et al.
Publicado: (2018)

Focal vs. fecal: Seasonal variation in the diet of wild vervet monkeys from observational and DNA metabarcoding data
por: Brun, Loïc, et al.
Publicado: (2022)

Metabarcoding of fecal pellets in wild muskox populations reveals negative relationships between microbiome and diet alpha diversity
por: Prewer, Erin, et al.
Publicado: (2023)

Exposure to synthetic hydraulic fracturing waste influences the mucosal bacterial community structure of the brook trout (Salvelinus fontinalis) epidermis
por: Galbraith, Heather, et al.
Publicado: (2018)

Correction: Combining genetic and demographic monitoring better informs conservation of an endangered urban snake
por: Wood, Dustin A., et al.
Publicado: (2021)

Small-Scale Fisheries Bycatch Jeopardizes Endangered Pacific Loggerhead Turtles
por: Peckham, S. Hoyt, et al.
Publicado: (2007)

Cannot write session to /tmp/vufind_sessions/sess_k7mrfos4pel7vnhs6lnqqiv9l5