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2-Aryl-5-carboxytetrazole as a New Photoaffinity Label for Drug Target Identification

[Image: see text] Photoaffinity labels are powerful tools for dissecting ligand–protein interactions, and they have a broad utility in medicinal chemistry and drug discovery. Traditional photoaffinity labels work through nonspecific C–H/X–H bond insertion reactions with the protein of interest by th...

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Autores principales: Herner, András, Marjanovic, Jasmina, Lewandowski, Tracey M., Marin, Violeta, Patterson, Melanie, Miesbauer, Laura, Ready, Damien, Williams, Jon, Vasudevan, Anil, Lin, Qing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2016
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5115731/
https://www.ncbi.nlm.nih.gov/pubmed/27740749
http://dx.doi.org/10.1021/jacs.6b06645
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author Herner, András
Marjanovic, Jasmina
Lewandowski, Tracey M.
Marin, Violeta
Patterson, Melanie
Miesbauer, Laura
Ready, Damien
Williams, Jon
Vasudevan, Anil
Lin, Qing
author_facet Herner, András
Marjanovic, Jasmina
Lewandowski, Tracey M.
Marin, Violeta
Patterson, Melanie
Miesbauer, Laura
Ready, Damien
Williams, Jon
Vasudevan, Anil
Lin, Qing
author_sort Herner, András
collection PubMed
description [Image: see text] Photoaffinity labels are powerful tools for dissecting ligand–protein interactions, and they have a broad utility in medicinal chemistry and drug discovery. Traditional photoaffinity labels work through nonspecific C–H/X–H bond insertion reactions with the protein of interest by the highly reactive photogenerated intermediate. Herein, we report a new photoaffinity label, 2-aryl-5-carboxytetrazole (ACT), that interacts with the target protein via a unique mechanism in which the photogenerated carboxynitrile imine reacts with a proximal nucleophile near the target active site. In two distinct case studies, we demonstrate that the attachment of ACT to a ligand does not significantly alter the binding affinity and specificity of the parent drug. Compared with diazirine and benzophenone, two commonly used photoaffinity labels, in two case studies ACT showed higher photo-cross-linking yields toward their protein targets in vitro based on mass spectrometry analysis. In the in situ target identification studies, ACT successfully captured the desired targets with an efficiency comparable to the diazirine. We expect that further development of this class of photoaffinity labels will lead to a broad range of applications across target identification, and validation and elucidation of the binding site in drug discovery.
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spelling pubmed-51157312016-11-21 2-Aryl-5-carboxytetrazole as a New Photoaffinity Label for Drug Target Identification Herner, András Marjanovic, Jasmina Lewandowski, Tracey M. Marin, Violeta Patterson, Melanie Miesbauer, Laura Ready, Damien Williams, Jon Vasudevan, Anil Lin, Qing J Am Chem Soc [Image: see text] Photoaffinity labels are powerful tools for dissecting ligand–protein interactions, and they have a broad utility in medicinal chemistry and drug discovery. Traditional photoaffinity labels work through nonspecific C–H/X–H bond insertion reactions with the protein of interest by the highly reactive photogenerated intermediate. Herein, we report a new photoaffinity label, 2-aryl-5-carboxytetrazole (ACT), that interacts with the target protein via a unique mechanism in which the photogenerated carboxynitrile imine reacts with a proximal nucleophile near the target active site. In two distinct case studies, we demonstrate that the attachment of ACT to a ligand does not significantly alter the binding affinity and specificity of the parent drug. Compared with diazirine and benzophenone, two commonly used photoaffinity labels, in two case studies ACT showed higher photo-cross-linking yields toward their protein targets in vitro based on mass spectrometry analysis. In the in situ target identification studies, ACT successfully captured the desired targets with an efficiency comparable to the diazirine. We expect that further development of this class of photoaffinity labels will lead to a broad range of applications across target identification, and validation and elucidation of the binding site in drug discovery. American Chemical Society 2016-10-14 2016-11-09 /pmc/articles/PMC5115731/ /pubmed/27740749 http://dx.doi.org/10.1021/jacs.6b06645 Text en Copyright © 2016 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Herner, András
Marjanovic, Jasmina
Lewandowski, Tracey M.
Marin, Violeta
Patterson, Melanie
Miesbauer, Laura
Ready, Damien
Williams, Jon
Vasudevan, Anil
Lin, Qing
2-Aryl-5-carboxytetrazole as a New Photoaffinity Label for Drug Target Identification
title 2-Aryl-5-carboxytetrazole as a New Photoaffinity Label for Drug Target Identification
title_full 2-Aryl-5-carboxytetrazole as a New Photoaffinity Label for Drug Target Identification
title_fullStr 2-Aryl-5-carboxytetrazole as a New Photoaffinity Label for Drug Target Identification
title_full_unstemmed 2-Aryl-5-carboxytetrazole as a New Photoaffinity Label for Drug Target Identification
title_short 2-Aryl-5-carboxytetrazole as a New Photoaffinity Label for Drug Target Identification
title_sort 2-aryl-5-carboxytetrazole as a new photoaffinity label for drug target identification
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5115731/
https://www.ncbi.nlm.nih.gov/pubmed/27740749
http://dx.doi.org/10.1021/jacs.6b06645
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