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Isolation and Characterization of a Bacteriophage Preying an Antifungal Bacterium

Several Bacillus species were isolated from rice field soils, and 16S rRNA gene sequence analysis showed that Bacillus cereus was the most abundant. A strain named BC1 showed antifungal activity against Rhizoctonia solani. Bacteriophages infecting strain BC1 were isolated from the same soil sample....

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Autores principales: Rahimi-Midani, Aryan, Kim, Kyoung-Ho, Lee, Seon-Woo, Jung, Sang Bong, Choi, Tae-Jin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korean Society of Plant Pathology 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5117869/
https://www.ncbi.nlm.nih.gov/pubmed/27904467
http://dx.doi.org/10.5423/PPJ.NT.07.2016.0153
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author Rahimi-Midani, Aryan
Kim, Kyoung-Ho
Lee, Seon-Woo
Jung, Sang Bong
Choi, Tae-Jin
author_facet Rahimi-Midani, Aryan
Kim, Kyoung-Ho
Lee, Seon-Woo
Jung, Sang Bong
Choi, Tae-Jin
author_sort Rahimi-Midani, Aryan
collection PubMed
description Several Bacillus species were isolated from rice field soils, and 16S rRNA gene sequence analysis showed that Bacillus cereus was the most abundant. A strain named BC1 showed antifungal activity against Rhizoctonia solani. Bacteriophages infecting strain BC1 were isolated from the same soil sample. The isolated phage PK16 had an icosahedral head of 100 ± 5 nm and tail of 200 ± 5 nm, indicating that it belonged to the family Myoviridae. Analysis of the complete linear dsDNA genome revealed a 158,127-bp genome with G + C content of 39.9% comprising 235 open reading frames as well as 19 tRNA genes (including 1 pseudogene). Blastp analysis showed that the proteins encoded by the PK16 genome had the closest hits to proteins of seven different bacteriophages. A neighbor-joining phylogenetic tree based on the major capsid protein showed a robust clustering of phage PK16 with phage JBP901 and BCP8-2 isolated from Korean fermented food.
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spelling pubmed-51178692016-12-01 Isolation and Characterization of a Bacteriophage Preying an Antifungal Bacterium Rahimi-Midani, Aryan Kim, Kyoung-Ho Lee, Seon-Woo Jung, Sang Bong Choi, Tae-Jin Plant Pathol J Note Several Bacillus species were isolated from rice field soils, and 16S rRNA gene sequence analysis showed that Bacillus cereus was the most abundant. A strain named BC1 showed antifungal activity against Rhizoctonia solani. Bacteriophages infecting strain BC1 were isolated from the same soil sample. The isolated phage PK16 had an icosahedral head of 100 ± 5 nm and tail of 200 ± 5 nm, indicating that it belonged to the family Myoviridae. Analysis of the complete linear dsDNA genome revealed a 158,127-bp genome with G + C content of 39.9% comprising 235 open reading frames as well as 19 tRNA genes (including 1 pseudogene). Blastp analysis showed that the proteins encoded by the PK16 genome had the closest hits to proteins of seven different bacteriophages. A neighbor-joining phylogenetic tree based on the major capsid protein showed a robust clustering of phage PK16 with phage JBP901 and BCP8-2 isolated from Korean fermented food. Korean Society of Plant Pathology 2016-12 2016-12-01 /pmc/articles/PMC5117869/ /pubmed/27904467 http://dx.doi.org/10.5423/PPJ.NT.07.2016.0153 Text en © The Korean Society of Plant Pathology This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0) which permits unrestricted noncommercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Note
Rahimi-Midani, Aryan
Kim, Kyoung-Ho
Lee, Seon-Woo
Jung, Sang Bong
Choi, Tae-Jin
Isolation and Characterization of a Bacteriophage Preying an Antifungal Bacterium
title Isolation and Characterization of a Bacteriophage Preying an Antifungal Bacterium
title_full Isolation and Characterization of a Bacteriophage Preying an Antifungal Bacterium
title_fullStr Isolation and Characterization of a Bacteriophage Preying an Antifungal Bacterium
title_full_unstemmed Isolation and Characterization of a Bacteriophage Preying an Antifungal Bacterium
title_short Isolation and Characterization of a Bacteriophage Preying an Antifungal Bacterium
title_sort isolation and characterization of a bacteriophage preying an antifungal bacterium
topic Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5117869/
https://www.ncbi.nlm.nih.gov/pubmed/27904467
http://dx.doi.org/10.5423/PPJ.NT.07.2016.0153
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