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Isolation and Characterization of a Bacteriophage Preying an Antifungal Bacterium
Several Bacillus species were isolated from rice field soils, and 16S rRNA gene sequence analysis showed that Bacillus cereus was the most abundant. A strain named BC1 showed antifungal activity against Rhizoctonia solani. Bacteriophages infecting strain BC1 were isolated from the same soil sample....
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Korean Society of Plant Pathology
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5117869/ https://www.ncbi.nlm.nih.gov/pubmed/27904467 http://dx.doi.org/10.5423/PPJ.NT.07.2016.0153 |
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author | Rahimi-Midani, Aryan Kim, Kyoung-Ho Lee, Seon-Woo Jung, Sang Bong Choi, Tae-Jin |
author_facet | Rahimi-Midani, Aryan Kim, Kyoung-Ho Lee, Seon-Woo Jung, Sang Bong Choi, Tae-Jin |
author_sort | Rahimi-Midani, Aryan |
collection | PubMed |
description | Several Bacillus species were isolated from rice field soils, and 16S rRNA gene sequence analysis showed that Bacillus cereus was the most abundant. A strain named BC1 showed antifungal activity against Rhizoctonia solani. Bacteriophages infecting strain BC1 were isolated from the same soil sample. The isolated phage PK16 had an icosahedral head of 100 ± 5 nm and tail of 200 ± 5 nm, indicating that it belonged to the family Myoviridae. Analysis of the complete linear dsDNA genome revealed a 158,127-bp genome with G + C content of 39.9% comprising 235 open reading frames as well as 19 tRNA genes (including 1 pseudogene). Blastp analysis showed that the proteins encoded by the PK16 genome had the closest hits to proteins of seven different bacteriophages. A neighbor-joining phylogenetic tree based on the major capsid protein showed a robust clustering of phage PK16 with phage JBP901 and BCP8-2 isolated from Korean fermented food. |
format | Online Article Text |
id | pubmed-5117869 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Korean Society of Plant Pathology |
record_format | MEDLINE/PubMed |
spelling | pubmed-51178692016-12-01 Isolation and Characterization of a Bacteriophage Preying an Antifungal Bacterium Rahimi-Midani, Aryan Kim, Kyoung-Ho Lee, Seon-Woo Jung, Sang Bong Choi, Tae-Jin Plant Pathol J Note Several Bacillus species were isolated from rice field soils, and 16S rRNA gene sequence analysis showed that Bacillus cereus was the most abundant. A strain named BC1 showed antifungal activity against Rhizoctonia solani. Bacteriophages infecting strain BC1 were isolated from the same soil sample. The isolated phage PK16 had an icosahedral head of 100 ± 5 nm and tail of 200 ± 5 nm, indicating that it belonged to the family Myoviridae. Analysis of the complete linear dsDNA genome revealed a 158,127-bp genome with G + C content of 39.9% comprising 235 open reading frames as well as 19 tRNA genes (including 1 pseudogene). Blastp analysis showed that the proteins encoded by the PK16 genome had the closest hits to proteins of seven different bacteriophages. A neighbor-joining phylogenetic tree based on the major capsid protein showed a robust clustering of phage PK16 with phage JBP901 and BCP8-2 isolated from Korean fermented food. Korean Society of Plant Pathology 2016-12 2016-12-01 /pmc/articles/PMC5117869/ /pubmed/27904467 http://dx.doi.org/10.5423/PPJ.NT.07.2016.0153 Text en © The Korean Society of Plant Pathology This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0) which permits unrestricted noncommercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Note Rahimi-Midani, Aryan Kim, Kyoung-Ho Lee, Seon-Woo Jung, Sang Bong Choi, Tae-Jin Isolation and Characterization of a Bacteriophage Preying an Antifungal Bacterium |
title | Isolation and Characterization of a Bacteriophage Preying an Antifungal Bacterium |
title_full | Isolation and Characterization of a Bacteriophage Preying an Antifungal Bacterium |
title_fullStr | Isolation and Characterization of a Bacteriophage Preying an Antifungal Bacterium |
title_full_unstemmed | Isolation and Characterization of a Bacteriophage Preying an Antifungal Bacterium |
title_short | Isolation and Characterization of a Bacteriophage Preying an Antifungal Bacterium |
title_sort | isolation and characterization of a bacteriophage preying an antifungal bacterium |
topic | Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5117869/ https://www.ncbi.nlm.nih.gov/pubmed/27904467 http://dx.doi.org/10.5423/PPJ.NT.07.2016.0153 |
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