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Identifying mutations in Tunisian families with retinal dystrophy

Retinal dystrophies (RD) are a rare genetic disorder with high genetic heterogeneity. This study aimed at identifying disease-causing variants in fifteen consanguineous Tunisian families. Full ophthalmic examination was performed. Index patients were subjected to IROme analysis or whole exome sequen...

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Autores principales: Habibi, Imen, Chebil, Ahmed, Falfoul, Yosra, Allaman-Pillet, Nathalie, Kort, Fedra, Schorderet, Daniel F., El Matri, Leila
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5118704/
https://www.ncbi.nlm.nih.gov/pubmed/27874104
http://dx.doi.org/10.1038/srep37455
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author Habibi, Imen
Chebil, Ahmed
Falfoul, Yosra
Allaman-Pillet, Nathalie
Kort, Fedra
Schorderet, Daniel F.
El Matri, Leila
author_facet Habibi, Imen
Chebil, Ahmed
Falfoul, Yosra
Allaman-Pillet, Nathalie
Kort, Fedra
Schorderet, Daniel F.
El Matri, Leila
author_sort Habibi, Imen
collection PubMed
description Retinal dystrophies (RD) are a rare genetic disorder with high genetic heterogeneity. This study aimed at identifying disease-causing variants in fifteen consanguineous Tunisian families. Full ophthalmic examination was performed. Index patients were subjected to IROme analysis or whole exome sequencing followed by homozygosity mapping. All detected variations were confirmed by direct Sanger sequencing. Mutation analysis in our patients revealed two compound heterozygous mutations p.(R91W);(V172D) in RPE65, and five novel homozygous mutations: p.R765C in CNGB1, p.H337R in PDE6B, splice site variant c.1129-2A > G and c.678_681delGAAG in FAM161A and c.1133 + 3_1133 + 6delAAGT in CERKL. The latter mutation impacts pre-mRNA splicing of CERKL. The other changes detected were six previously reported mutations in CNGB3 (p.R203*), ABCA4 (p.W782*), NR2E3 (p.R311Q), RPE65 (p.H182Y), PROM1 (c.1354dupT) and EYS (c.5928-2A > G). Segregation analysis in each family showed that all affected individuals were homozygotes and unaffected individuals were either heterozygote carriers or homozygous wild type allele. These results confirm the involvement of a large number of genes in RD in the Tunisian population.
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spelling pubmed-51187042016-11-28 Identifying mutations in Tunisian families with retinal dystrophy Habibi, Imen Chebil, Ahmed Falfoul, Yosra Allaman-Pillet, Nathalie Kort, Fedra Schorderet, Daniel F. El Matri, Leila Sci Rep Article Retinal dystrophies (RD) are a rare genetic disorder with high genetic heterogeneity. This study aimed at identifying disease-causing variants in fifteen consanguineous Tunisian families. Full ophthalmic examination was performed. Index patients were subjected to IROme analysis or whole exome sequencing followed by homozygosity mapping. All detected variations were confirmed by direct Sanger sequencing. Mutation analysis in our patients revealed two compound heterozygous mutations p.(R91W);(V172D) in RPE65, and five novel homozygous mutations: p.R765C in CNGB1, p.H337R in PDE6B, splice site variant c.1129-2A > G and c.678_681delGAAG in FAM161A and c.1133 + 3_1133 + 6delAAGT in CERKL. The latter mutation impacts pre-mRNA splicing of CERKL. The other changes detected were six previously reported mutations in CNGB3 (p.R203*), ABCA4 (p.W782*), NR2E3 (p.R311Q), RPE65 (p.H182Y), PROM1 (c.1354dupT) and EYS (c.5928-2A > G). Segregation analysis in each family showed that all affected individuals were homozygotes and unaffected individuals were either heterozygote carriers or homozygous wild type allele. These results confirm the involvement of a large number of genes in RD in the Tunisian population. Nature Publishing Group 2016-11-22 /pmc/articles/PMC5118704/ /pubmed/27874104 http://dx.doi.org/10.1038/srep37455 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Habibi, Imen
Chebil, Ahmed
Falfoul, Yosra
Allaman-Pillet, Nathalie
Kort, Fedra
Schorderet, Daniel F.
El Matri, Leila
Identifying mutations in Tunisian families with retinal dystrophy
title Identifying mutations in Tunisian families with retinal dystrophy
title_full Identifying mutations in Tunisian families with retinal dystrophy
title_fullStr Identifying mutations in Tunisian families with retinal dystrophy
title_full_unstemmed Identifying mutations in Tunisian families with retinal dystrophy
title_short Identifying mutations in Tunisian families with retinal dystrophy
title_sort identifying mutations in tunisian families with retinal dystrophy
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5118704/
https://www.ncbi.nlm.nih.gov/pubmed/27874104
http://dx.doi.org/10.1038/srep37455
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