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Co-occurrence of Local Anisotropic Gradient Orientations (CoLlAGe): A new radiomics descriptor

In this paper, we introduce a new radiomic descriptor, Co-occurrence of Local Anisotropic Gradient Orientations (CoLlAGe) for capturing subtle differences between benign and pathologic phenotypes which may be visually indistinguishable on routine anatomic imaging. CoLlAGe seeks to capture and exploi...

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Autores principales: Prasanna, Prateek, Tiwari, Pallavi, Madabhushi, Anant
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5118705/
https://www.ncbi.nlm.nih.gov/pubmed/27872484
http://dx.doi.org/10.1038/srep37241
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author Prasanna, Prateek
Tiwari, Pallavi
Madabhushi, Anant
author_facet Prasanna, Prateek
Tiwari, Pallavi
Madabhushi, Anant
author_sort Prasanna, Prateek
collection PubMed
description In this paper, we introduce a new radiomic descriptor, Co-occurrence of Local Anisotropic Gradient Orientations (CoLlAGe) for capturing subtle differences between benign and pathologic phenotypes which may be visually indistinguishable on routine anatomic imaging. CoLlAGe seeks to capture and exploit local anisotropic differences in voxel-level gradient orientations to distinguish similar appearing phenotypes. CoLlAGe involves assigning every image voxel an entropy value associated with the co-occurrence matrix of gradient orientations computed around every voxel. The hypothesis behind CoLlAGe is that benign and pathologic phenotypes even though they may appear similar on anatomic imaging, will differ in their local entropy patterns, in turn reflecting subtle local differences in tissue microarchitecture. We demonstrate CoLlAGe’s utility in three clinically challenging classification problems: distinguishing (1) radiation necrosis, a benign yet confounding effect of radiation treatment, from recurrent tumors on T1-w MRI in 42 brain tumor patients, (2) different molecular sub-types of breast cancer on DCE-MRI in 65 studies and (3) non-small cell lung cancer (adenocarcinomas) from benign fungal infection (granulomas) on 120 non-contrast CT studies. For each of these classification problems, CoLlAGE in conjunction with a random forest classifier outperformed state of the art radiomic descriptors (Haralick, Gabor, Histogram of Gradient Orientations).
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spelling pubmed-51187052016-11-28 Co-occurrence of Local Anisotropic Gradient Orientations (CoLlAGe): A new radiomics descriptor Prasanna, Prateek Tiwari, Pallavi Madabhushi, Anant Sci Rep Article In this paper, we introduce a new radiomic descriptor, Co-occurrence of Local Anisotropic Gradient Orientations (CoLlAGe) for capturing subtle differences between benign and pathologic phenotypes which may be visually indistinguishable on routine anatomic imaging. CoLlAGe seeks to capture and exploit local anisotropic differences in voxel-level gradient orientations to distinguish similar appearing phenotypes. CoLlAGe involves assigning every image voxel an entropy value associated with the co-occurrence matrix of gradient orientations computed around every voxel. The hypothesis behind CoLlAGe is that benign and pathologic phenotypes even though they may appear similar on anatomic imaging, will differ in their local entropy patterns, in turn reflecting subtle local differences in tissue microarchitecture. We demonstrate CoLlAGe’s utility in three clinically challenging classification problems: distinguishing (1) radiation necrosis, a benign yet confounding effect of radiation treatment, from recurrent tumors on T1-w MRI in 42 brain tumor patients, (2) different molecular sub-types of breast cancer on DCE-MRI in 65 studies and (3) non-small cell lung cancer (adenocarcinomas) from benign fungal infection (granulomas) on 120 non-contrast CT studies. For each of these classification problems, CoLlAGE in conjunction with a random forest classifier outperformed state of the art radiomic descriptors (Haralick, Gabor, Histogram of Gradient Orientations). Nature Publishing Group 2016-11-22 /pmc/articles/PMC5118705/ /pubmed/27872484 http://dx.doi.org/10.1038/srep37241 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Prasanna, Prateek
Tiwari, Pallavi
Madabhushi, Anant
Co-occurrence of Local Anisotropic Gradient Orientations (CoLlAGe): A new radiomics descriptor
title Co-occurrence of Local Anisotropic Gradient Orientations (CoLlAGe): A new radiomics descriptor
title_full Co-occurrence of Local Anisotropic Gradient Orientations (CoLlAGe): A new radiomics descriptor
title_fullStr Co-occurrence of Local Anisotropic Gradient Orientations (CoLlAGe): A new radiomics descriptor
title_full_unstemmed Co-occurrence of Local Anisotropic Gradient Orientations (CoLlAGe): A new radiomics descriptor
title_short Co-occurrence of Local Anisotropic Gradient Orientations (CoLlAGe): A new radiomics descriptor
title_sort co-occurrence of local anisotropic gradient orientations (collage): a new radiomics descriptor
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5118705/
https://www.ncbi.nlm.nih.gov/pubmed/27872484
http://dx.doi.org/10.1038/srep37241
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