Cargando…
Evidence for Ecological Flexibility in the Cosmopolitan Genus Curtobacterium
Assigning ecological roles to bacterial taxa remains imperative to understanding how microbial communities will respond to changing environmental conditions. Here we analyze the genus Curtobacterium, as it was found to be the most abundant taxon in a leaf litter community in southern California. Tra...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5118839/ https://www.ncbi.nlm.nih.gov/pubmed/27920771 http://dx.doi.org/10.3389/fmicb.2016.01874 |
_version_ | 1782469002912595968 |
---|---|
author | Chase, Alexander B. Arevalo, Philip Polz, Martin F. Berlemont, Renaud Martiny, Jennifer B. H. |
author_facet | Chase, Alexander B. Arevalo, Philip Polz, Martin F. Berlemont, Renaud Martiny, Jennifer B. H. |
author_sort | Chase, Alexander B. |
collection | PubMed |
description | Assigning ecological roles to bacterial taxa remains imperative to understanding how microbial communities will respond to changing environmental conditions. Here we analyze the genus Curtobacterium, as it was found to be the most abundant taxon in a leaf litter community in southern California. Traditional characterization of this taxon predominantly associates it as the causal pathogen in the agricultural crops of dry beans. Therefore, we sought to investigate whether the abundance of this genus was because of its role as a plant pathogen or another ecological role. By collating >24,000 16S rRNA sequences with 120 genomes across the Microbacteriaceae family, we show that Curtobacterium has a global distribution with a predominant presence in soil ecosystems. Moreover, this genus harbors a high diversity of genomic potential for the degradation of carbohydrates, specifically with regards to structural polysaccharides. We conclude that Curtobacterium may be responsible for the degradation of organic matter within litter communities. |
format | Online Article Text |
id | pubmed-5118839 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-51188392016-12-05 Evidence for Ecological Flexibility in the Cosmopolitan Genus Curtobacterium Chase, Alexander B. Arevalo, Philip Polz, Martin F. Berlemont, Renaud Martiny, Jennifer B. H. Front Microbiol Microbiology Assigning ecological roles to bacterial taxa remains imperative to understanding how microbial communities will respond to changing environmental conditions. Here we analyze the genus Curtobacterium, as it was found to be the most abundant taxon in a leaf litter community in southern California. Traditional characterization of this taxon predominantly associates it as the causal pathogen in the agricultural crops of dry beans. Therefore, we sought to investigate whether the abundance of this genus was because of its role as a plant pathogen or another ecological role. By collating >24,000 16S rRNA sequences with 120 genomes across the Microbacteriaceae family, we show that Curtobacterium has a global distribution with a predominant presence in soil ecosystems. Moreover, this genus harbors a high diversity of genomic potential for the degradation of carbohydrates, specifically with regards to structural polysaccharides. We conclude that Curtobacterium may be responsible for the degradation of organic matter within litter communities. Frontiers Media S.A. 2016-11-22 /pmc/articles/PMC5118839/ /pubmed/27920771 http://dx.doi.org/10.3389/fmicb.2016.01874 Text en Copyright © 2016 Chase, Arevalo, Polz, Berlemont and Martiny. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Chase, Alexander B. Arevalo, Philip Polz, Martin F. Berlemont, Renaud Martiny, Jennifer B. H. Evidence for Ecological Flexibility in the Cosmopolitan Genus Curtobacterium |
title | Evidence for Ecological Flexibility in the Cosmopolitan Genus Curtobacterium |
title_full | Evidence for Ecological Flexibility in the Cosmopolitan Genus Curtobacterium |
title_fullStr | Evidence for Ecological Flexibility in the Cosmopolitan Genus Curtobacterium |
title_full_unstemmed | Evidence for Ecological Flexibility in the Cosmopolitan Genus Curtobacterium |
title_short | Evidence for Ecological Flexibility in the Cosmopolitan Genus Curtobacterium |
title_sort | evidence for ecological flexibility in the cosmopolitan genus curtobacterium |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5118839/ https://www.ncbi.nlm.nih.gov/pubmed/27920771 http://dx.doi.org/10.3389/fmicb.2016.01874 |
work_keys_str_mv | AT chasealexanderb evidenceforecologicalflexibilityinthecosmopolitangenuscurtobacterium AT arevalophilip evidenceforecologicalflexibilityinthecosmopolitangenuscurtobacterium AT polzmartinf evidenceforecologicalflexibilityinthecosmopolitangenuscurtobacterium AT berlemontrenaud evidenceforecologicalflexibilityinthecosmopolitangenuscurtobacterium AT martinyjenniferbh evidenceforecologicalflexibilityinthecosmopolitangenuscurtobacterium |