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Toward a new paradigm of DNA writing using a massively parallel sequencing platform and degenerate oligonucleotide

All synthetic DNA materials require prior programming of the building blocks of the oligonucleotide sequences. The development of a programmable microarray platform provides cost-effective and time-efficient solutions in the field of data storage using DNA. However, the scalability of the synthesis...

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Detalles Bibliográficos
Autores principales: Hwang, Byungjin, Bang, Duhee
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5120280/
https://www.ncbi.nlm.nih.gov/pubmed/27876825
http://dx.doi.org/10.1038/srep37176
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author Hwang, Byungjin
Bang, Duhee
author_facet Hwang, Byungjin
Bang, Duhee
author_sort Hwang, Byungjin
collection PubMed
description All synthetic DNA materials require prior programming of the building blocks of the oligonucleotide sequences. The development of a programmable microarray platform provides cost-effective and time-efficient solutions in the field of data storage using DNA. However, the scalability of the synthesis is not on par with the accelerating sequencing capacity. Here, we report on a new paradigm of generating genetic material (writing) using a degenerate oligonucleotide and optomechanical retrieval method that leverages sequencing (reading) throughput to generate the desired number of oligonucleotides. As a proof of concept, we demonstrate the feasibility of our concept in digital information storage in DNA. In simulation, the ability to store data is expected to exponentially increase with increase in degenerate space. The present study highlights the major framework change in conventional DNA writing paradigm as a sequencer itself can become a potential source of making genetic materials.
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spelling pubmed-51202802016-11-28 Toward a new paradigm of DNA writing using a massively parallel sequencing platform and degenerate oligonucleotide Hwang, Byungjin Bang, Duhee Sci Rep Article All synthetic DNA materials require prior programming of the building blocks of the oligonucleotide sequences. The development of a programmable microarray platform provides cost-effective and time-efficient solutions in the field of data storage using DNA. However, the scalability of the synthesis is not on par with the accelerating sequencing capacity. Here, we report on a new paradigm of generating genetic material (writing) using a degenerate oligonucleotide and optomechanical retrieval method that leverages sequencing (reading) throughput to generate the desired number of oligonucleotides. As a proof of concept, we demonstrate the feasibility of our concept in digital information storage in DNA. In simulation, the ability to store data is expected to exponentially increase with increase in degenerate space. The present study highlights the major framework change in conventional DNA writing paradigm as a sequencer itself can become a potential source of making genetic materials. Nature Publishing Group 2016-11-23 /pmc/articles/PMC5120280/ /pubmed/27876825 http://dx.doi.org/10.1038/srep37176 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Hwang, Byungjin
Bang, Duhee
Toward a new paradigm of DNA writing using a massively parallel sequencing platform and degenerate oligonucleotide
title Toward a new paradigm of DNA writing using a massively parallel sequencing platform and degenerate oligonucleotide
title_full Toward a new paradigm of DNA writing using a massively parallel sequencing platform and degenerate oligonucleotide
title_fullStr Toward a new paradigm of DNA writing using a massively parallel sequencing platform and degenerate oligonucleotide
title_full_unstemmed Toward a new paradigm of DNA writing using a massively parallel sequencing platform and degenerate oligonucleotide
title_short Toward a new paradigm of DNA writing using a massively parallel sequencing platform and degenerate oligonucleotide
title_sort toward a new paradigm of dna writing using a massively parallel sequencing platform and degenerate oligonucleotide
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5120280/
https://www.ncbi.nlm.nih.gov/pubmed/27876825
http://dx.doi.org/10.1038/srep37176
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