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Toward a new paradigm of DNA writing using a massively parallel sequencing platform and degenerate oligonucleotide
All synthetic DNA materials require prior programming of the building blocks of the oligonucleotide sequences. The development of a programmable microarray platform provides cost-effective and time-efficient solutions in the field of data storage using DNA. However, the scalability of the synthesis...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5120280/ https://www.ncbi.nlm.nih.gov/pubmed/27876825 http://dx.doi.org/10.1038/srep37176 |
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author | Hwang, Byungjin Bang, Duhee |
author_facet | Hwang, Byungjin Bang, Duhee |
author_sort | Hwang, Byungjin |
collection | PubMed |
description | All synthetic DNA materials require prior programming of the building blocks of the oligonucleotide sequences. The development of a programmable microarray platform provides cost-effective and time-efficient solutions in the field of data storage using DNA. However, the scalability of the synthesis is not on par with the accelerating sequencing capacity. Here, we report on a new paradigm of generating genetic material (writing) using a degenerate oligonucleotide and optomechanical retrieval method that leverages sequencing (reading) throughput to generate the desired number of oligonucleotides. As a proof of concept, we demonstrate the feasibility of our concept in digital information storage in DNA. In simulation, the ability to store data is expected to exponentially increase with increase in degenerate space. The present study highlights the major framework change in conventional DNA writing paradigm as a sequencer itself can become a potential source of making genetic materials. |
format | Online Article Text |
id | pubmed-5120280 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-51202802016-11-28 Toward a new paradigm of DNA writing using a massively parallel sequencing platform and degenerate oligonucleotide Hwang, Byungjin Bang, Duhee Sci Rep Article All synthetic DNA materials require prior programming of the building blocks of the oligonucleotide sequences. The development of a programmable microarray platform provides cost-effective and time-efficient solutions in the field of data storage using DNA. However, the scalability of the synthesis is not on par with the accelerating sequencing capacity. Here, we report on a new paradigm of generating genetic material (writing) using a degenerate oligonucleotide and optomechanical retrieval method that leverages sequencing (reading) throughput to generate the desired number of oligonucleotides. As a proof of concept, we demonstrate the feasibility of our concept in digital information storage in DNA. In simulation, the ability to store data is expected to exponentially increase with increase in degenerate space. The present study highlights the major framework change in conventional DNA writing paradigm as a sequencer itself can become a potential source of making genetic materials. Nature Publishing Group 2016-11-23 /pmc/articles/PMC5120280/ /pubmed/27876825 http://dx.doi.org/10.1038/srep37176 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Hwang, Byungjin Bang, Duhee Toward a new paradigm of DNA writing using a massively parallel sequencing platform and degenerate oligonucleotide |
title | Toward a new paradigm of DNA writing using a massively parallel sequencing platform and degenerate oligonucleotide |
title_full | Toward a new paradigm of DNA writing using a massively parallel sequencing platform and degenerate oligonucleotide |
title_fullStr | Toward a new paradigm of DNA writing using a massively parallel sequencing platform and degenerate oligonucleotide |
title_full_unstemmed | Toward a new paradigm of DNA writing using a massively parallel sequencing platform and degenerate oligonucleotide |
title_short | Toward a new paradigm of DNA writing using a massively parallel sequencing platform and degenerate oligonucleotide |
title_sort | toward a new paradigm of dna writing using a massively parallel sequencing platform and degenerate oligonucleotide |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5120280/ https://www.ncbi.nlm.nih.gov/pubmed/27876825 http://dx.doi.org/10.1038/srep37176 |
work_keys_str_mv | AT hwangbyungjin towardanewparadigmofdnawritingusingamassivelyparallelsequencingplatformanddegenerateoligonucleotide AT bangduhee towardanewparadigmofdnawritingusingamassivelyparallelsequencingplatformanddegenerateoligonucleotide |