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Crystal structure of 3-(2-hydroxyethyl)-2-methylsulfanyl-6-nitro-3H-benzimidazol-1-ium chloride monohydrate
In the cation of the title hydrated molecular salt, C(10)H(12)N(3)O(3)S(+)·Cl(−)·H(2)O, the benzimidazolium ring system is almost planar (r.m.s. deviation = 0.006 Å) and the nitro group is inclined at an angle of 4.86 (9)° to this plane. In the crystal, C—H⋯O hydrogen bonds form centrosymmetric R (2...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5120724/ https://www.ncbi.nlm.nih.gov/pubmed/27920934 http://dx.doi.org/10.1107/S2056989016013657 |
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author | Abou, Akoun Coulibali, Siomenan Kakou-Yao, Rita Zoueu, T. Jérémie Tenon, A. Jules |
author_facet | Abou, Akoun Coulibali, Siomenan Kakou-Yao, Rita Zoueu, T. Jérémie Tenon, A. Jules |
author_sort | Abou, Akoun |
collection | PubMed |
description | In the cation of the title hydrated molecular salt, C(10)H(12)N(3)O(3)S(+)·Cl(−)·H(2)O, the benzimidazolium ring system is almost planar (r.m.s. deviation = 0.006 Å) and the nitro group is inclined at an angle of 4.86 (9)° to this plane. In the crystal, C—H⋯O hydrogen bonds form centrosymmetric R (2) (2)(20) dimers and these are further aggregated through N—H⋯O and O—H⋯Cl hydrogen bonds involving the water molecules and chloride anions. Aromatic π–π stacking interactions are also found between two parallel benzene rings or the benzene and imidazolium rings, with centroid–centroid distances of 3.5246 (9) and 3.7756 (9) Å, respectively. Analysis of the bond lengths and comparison with related compounds show that the nitro substituent is not involved in conjugation with the adjacent π-system and hence has no effect on the charge distribution of the heterocyclic ring. |
format | Online Article Text |
id | pubmed-5120724 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-51207242016-12-05 Crystal structure of 3-(2-hydroxyethyl)-2-methylsulfanyl-6-nitro-3H-benzimidazol-1-ium chloride monohydrate Abou, Akoun Coulibali, Siomenan Kakou-Yao, Rita Zoueu, T. Jérémie Tenon, A. Jules Acta Crystallogr E Crystallogr Commun Research Communications In the cation of the title hydrated molecular salt, C(10)H(12)N(3)O(3)S(+)·Cl(−)·H(2)O, the benzimidazolium ring system is almost planar (r.m.s. deviation = 0.006 Å) and the nitro group is inclined at an angle of 4.86 (9)° to this plane. In the crystal, C—H⋯O hydrogen bonds form centrosymmetric R (2) (2)(20) dimers and these are further aggregated through N—H⋯O and O—H⋯Cl hydrogen bonds involving the water molecules and chloride anions. Aromatic π–π stacking interactions are also found between two parallel benzene rings or the benzene and imidazolium rings, with centroid–centroid distances of 3.5246 (9) and 3.7756 (9) Å, respectively. Analysis of the bond lengths and comparison with related compounds show that the nitro substituent is not involved in conjugation with the adjacent π-system and hence has no effect on the charge distribution of the heterocyclic ring. International Union of Crystallography 2016-08-31 /pmc/articles/PMC5120724/ /pubmed/27920934 http://dx.doi.org/10.1107/S2056989016013657 Text en © Abou et al. 2016 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Communications Abou, Akoun Coulibali, Siomenan Kakou-Yao, Rita Zoueu, T. Jérémie Tenon, A. Jules Crystal structure of 3-(2-hydroxyethyl)-2-methylsulfanyl-6-nitro-3H-benzimidazol-1-ium chloride monohydrate |
title | Crystal structure of 3-(2-hydroxyethyl)-2-methylsulfanyl-6-nitro-3H-benzimidazol-1-ium chloride monohydrate |
title_full | Crystal structure of 3-(2-hydroxyethyl)-2-methylsulfanyl-6-nitro-3H-benzimidazol-1-ium chloride monohydrate |
title_fullStr | Crystal structure of 3-(2-hydroxyethyl)-2-methylsulfanyl-6-nitro-3H-benzimidazol-1-ium chloride monohydrate |
title_full_unstemmed | Crystal structure of 3-(2-hydroxyethyl)-2-methylsulfanyl-6-nitro-3H-benzimidazol-1-ium chloride monohydrate |
title_short | Crystal structure of 3-(2-hydroxyethyl)-2-methylsulfanyl-6-nitro-3H-benzimidazol-1-ium chloride monohydrate |
title_sort | crystal structure of 3-(2-hydroxyethyl)-2-methylsulfanyl-6-nitro-3h-benzimidazol-1-ium chloride monohydrate |
topic | Research Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5120724/ https://www.ncbi.nlm.nih.gov/pubmed/27920934 http://dx.doi.org/10.1107/S2056989016013657 |
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