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A genomic study on distribution of human leukocyte antigen (HLA)-A and HLA-B alleles in Lak population of Iran()

Anthropological studies based on the highly polymorphic gene, human leukocyte antigen (HLA), provide useful information for bone marrow donor registry, forensic medicine, disease association studies, as well as infertility treatment, designing peptide vaccines against tumors, and infectious or autoi...

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Autores principales: Shahsavar, Farhad, Varzi, Ali-Mohammad, Ahmadi, Seyyed Amir Yasin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5122700/
https://www.ncbi.nlm.nih.gov/pubmed/27900264
http://dx.doi.org/10.1016/j.gdata.2016.11.012
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author Shahsavar, Farhad
Varzi, Ali-Mohammad
Ahmadi, Seyyed Amir Yasin
author_facet Shahsavar, Farhad
Varzi, Ali-Mohammad
Ahmadi, Seyyed Amir Yasin
author_sort Shahsavar, Farhad
collection PubMed
description Anthropological studies based on the highly polymorphic gene, human leukocyte antigen (HLA), provide useful information for bone marrow donor registry, forensic medicine, disease association studies, as well as infertility treatment, designing peptide vaccines against tumors, and infectious or autoimmune diseases. The aim of this study was to determine HLA-A and HLA-B allele frequencies in 100 unrelated Lak/lᴂk/individuals from Lorestan province of Iran. Finally, we compared the results with that previously described in Iranian population. Commercial HLA-Type kits from BAG (Lich, Germany) company were used for determination of the HLA-A and HLA-B allele frequencies in genomic DNA, based on polymerase chain reaction with sequence specific primer (PCR-SSP) assay. The differences between the populations in distribution of HLA-A and HLA-B alleles were estimated by chi-squared test with Yate's correction. The most frequent HLA-A alleles were *24 (20%), *02 (18%), *03 (12%) and *11 (10%), and the most frequent HLA-B alleles were *35 (24%), *51 (16%), *18 (6%) and *38 (6%) in Lak population. HLA-A*66 (1%), *74(1%) and HLA-B*48 (1%), *55(1%) were the least observed frequencies in Lak population. Our results based on HLA-A and HLA-B allele frequencies showed that Lak population possesses the previously reported general features of Iranians but still with unique.
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spelling pubmed-51227002016-11-29 A genomic study on distribution of human leukocyte antigen (HLA)-A and HLA-B alleles in Lak population of Iran() Shahsavar, Farhad Varzi, Ali-Mohammad Ahmadi, Seyyed Amir Yasin Genom Data Regular Article Anthropological studies based on the highly polymorphic gene, human leukocyte antigen (HLA), provide useful information for bone marrow donor registry, forensic medicine, disease association studies, as well as infertility treatment, designing peptide vaccines against tumors, and infectious or autoimmune diseases. The aim of this study was to determine HLA-A and HLA-B allele frequencies in 100 unrelated Lak/lᴂk/individuals from Lorestan province of Iran. Finally, we compared the results with that previously described in Iranian population. Commercial HLA-Type kits from BAG (Lich, Germany) company were used for determination of the HLA-A and HLA-B allele frequencies in genomic DNA, based on polymerase chain reaction with sequence specific primer (PCR-SSP) assay. The differences between the populations in distribution of HLA-A and HLA-B alleles were estimated by chi-squared test with Yate's correction. The most frequent HLA-A alleles were *24 (20%), *02 (18%), *03 (12%) and *11 (10%), and the most frequent HLA-B alleles were *35 (24%), *51 (16%), *18 (6%) and *38 (6%) in Lak population. HLA-A*66 (1%), *74(1%) and HLA-B*48 (1%), *55(1%) were the least observed frequencies in Lak population. Our results based on HLA-A and HLA-B allele frequencies showed that Lak population possesses the previously reported general features of Iranians but still with unique. Elsevier 2016-11-10 /pmc/articles/PMC5122700/ /pubmed/27900264 http://dx.doi.org/10.1016/j.gdata.2016.11.012 Text en © 2016 Published by Elsevier Inc. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Regular Article
Shahsavar, Farhad
Varzi, Ali-Mohammad
Ahmadi, Seyyed Amir Yasin
A genomic study on distribution of human leukocyte antigen (HLA)-A and HLA-B alleles in Lak population of Iran()
title A genomic study on distribution of human leukocyte antigen (HLA)-A and HLA-B alleles in Lak population of Iran()
title_full A genomic study on distribution of human leukocyte antigen (HLA)-A and HLA-B alleles in Lak population of Iran()
title_fullStr A genomic study on distribution of human leukocyte antigen (HLA)-A and HLA-B alleles in Lak population of Iran()
title_full_unstemmed A genomic study on distribution of human leukocyte antigen (HLA)-A and HLA-B alleles in Lak population of Iran()
title_short A genomic study on distribution of human leukocyte antigen (HLA)-A and HLA-B alleles in Lak population of Iran()
title_sort genomic study on distribution of human leukocyte antigen (hla)-a and hla-b alleles in lak population of iran()
topic Regular Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5122700/
https://www.ncbi.nlm.nih.gov/pubmed/27900264
http://dx.doi.org/10.1016/j.gdata.2016.11.012
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