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Economic importance, taxonomic representation and scientific priority as drivers of genome sequencing projects
BACKGROUND: Of the approximately two hundred sequenced plant genomes, how many and which ones were sequenced motivated by strictly or largely scientific considerations, and how many by chiefly economic, in a wide sense, incentives? And how large a role does publication opportunity play? RESULTS: In...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5123250/ https://www.ncbi.nlm.nih.gov/pubmed/28185558 http://dx.doi.org/10.1186/s12864-016-3100-9 |
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author | Vallée, Geneviève C. Muñoz, Daniella Santos Sankoff, David |
author_facet | Vallée, Geneviève C. Muñoz, Daniella Santos Sankoff, David |
author_sort | Vallée, Geneviève C. |
collection | PubMed |
description | BACKGROUND: Of the approximately two hundred sequenced plant genomes, how many and which ones were sequenced motivated by strictly or largely scientific considerations, and how many by chiefly economic, in a wide sense, incentives? And how large a role does publication opportunity play? RESULTS: In an integration of multiple disparate databases and other sources of information, we collect and analyze data on the size (number of species) in the plant orders and families containing sequenced genomes, on the trade value of these species, and of all the same-family or same-order species, and on the publication priority within the family and order. These data are subjected to multiple regression and other statistical analyses. We find that despite the initial importance of model organisms, it is clearly economic considerations that outweigh others in the choice of genome to be sequenced. CONCLUSIONS: This has important implications for generalizations about plant genomes, since human choices of plants to harvest (and cultivate) will have incurred many biases with respect to phenotypic characteristics and hence of genomic properties, and recent genomic evolution will also have been affected by human agricultural practices. |
format | Online Article Text |
id | pubmed-5123250 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-51232502016-12-06 Economic importance, taxonomic representation and scientific priority as drivers of genome sequencing projects Vallée, Geneviève C. Muñoz, Daniella Santos Sankoff, David BMC Genomics Research BACKGROUND: Of the approximately two hundred sequenced plant genomes, how many and which ones were sequenced motivated by strictly or largely scientific considerations, and how many by chiefly economic, in a wide sense, incentives? And how large a role does publication opportunity play? RESULTS: In an integration of multiple disparate databases and other sources of information, we collect and analyze data on the size (number of species) in the plant orders and families containing sequenced genomes, on the trade value of these species, and of all the same-family or same-order species, and on the publication priority within the family and order. These data are subjected to multiple regression and other statistical analyses. We find that despite the initial importance of model organisms, it is clearly economic considerations that outweigh others in the choice of genome to be sequenced. CONCLUSIONS: This has important implications for generalizations about plant genomes, since human choices of plants to harvest (and cultivate) will have incurred many biases with respect to phenotypic characteristics and hence of genomic properties, and recent genomic evolution will also have been affected by human agricultural practices. BioMed Central 2016-11-11 /pmc/articles/PMC5123250/ /pubmed/28185558 http://dx.doi.org/10.1186/s12864-016-3100-9 Text en © The Author(s) 2016 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Vallée, Geneviève C. Muñoz, Daniella Santos Sankoff, David Economic importance, taxonomic representation and scientific priority as drivers of genome sequencing projects |
title | Economic importance, taxonomic representation and scientific priority as drivers of genome sequencing projects |
title_full | Economic importance, taxonomic representation and scientific priority as drivers of genome sequencing projects |
title_fullStr | Economic importance, taxonomic representation and scientific priority as drivers of genome sequencing projects |
title_full_unstemmed | Economic importance, taxonomic representation and scientific priority as drivers of genome sequencing projects |
title_short | Economic importance, taxonomic representation and scientific priority as drivers of genome sequencing projects |
title_sort | economic importance, taxonomic representation and scientific priority as drivers of genome sequencing projects |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5123250/ https://www.ncbi.nlm.nih.gov/pubmed/28185558 http://dx.doi.org/10.1186/s12864-016-3100-9 |
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