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Economic importance, taxonomic representation and scientific priority as drivers of genome sequencing projects

BACKGROUND: Of the approximately two hundred sequenced plant genomes, how many and which ones were sequenced motivated by strictly or largely scientific considerations, and how many by chiefly economic, in a wide sense, incentives? And how large a role does publication opportunity play? RESULTS: In...

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Detalles Bibliográficos
Autores principales: Vallée, Geneviève C., Muñoz, Daniella Santos, Sankoff, David
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5123250/
https://www.ncbi.nlm.nih.gov/pubmed/28185558
http://dx.doi.org/10.1186/s12864-016-3100-9
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author Vallée, Geneviève C.
Muñoz, Daniella Santos
Sankoff, David
author_facet Vallée, Geneviève C.
Muñoz, Daniella Santos
Sankoff, David
author_sort Vallée, Geneviève C.
collection PubMed
description BACKGROUND: Of the approximately two hundred sequenced plant genomes, how many and which ones were sequenced motivated by strictly or largely scientific considerations, and how many by chiefly economic, in a wide sense, incentives? And how large a role does publication opportunity play? RESULTS: In an integration of multiple disparate databases and other sources of information, we collect and analyze data on the size (number of species) in the plant orders and families containing sequenced genomes, on the trade value of these species, and of all the same-family or same-order species, and on the publication priority within the family and order. These data are subjected to multiple regression and other statistical analyses. We find that despite the initial importance of model organisms, it is clearly economic considerations that outweigh others in the choice of genome to be sequenced. CONCLUSIONS: This has important implications for generalizations about plant genomes, since human choices of plants to harvest (and cultivate) will have incurred many biases with respect to phenotypic characteristics and hence of genomic properties, and recent genomic evolution will also have been affected by human agricultural practices.
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spelling pubmed-51232502016-12-06 Economic importance, taxonomic representation and scientific priority as drivers of genome sequencing projects Vallée, Geneviève C. Muñoz, Daniella Santos Sankoff, David BMC Genomics Research BACKGROUND: Of the approximately two hundred sequenced plant genomes, how many and which ones were sequenced motivated by strictly or largely scientific considerations, and how many by chiefly economic, in a wide sense, incentives? And how large a role does publication opportunity play? RESULTS: In an integration of multiple disparate databases and other sources of information, we collect and analyze data on the size (number of species) in the plant orders and families containing sequenced genomes, on the trade value of these species, and of all the same-family or same-order species, and on the publication priority within the family and order. These data are subjected to multiple regression and other statistical analyses. We find that despite the initial importance of model organisms, it is clearly economic considerations that outweigh others in the choice of genome to be sequenced. CONCLUSIONS: This has important implications for generalizations about plant genomes, since human choices of plants to harvest (and cultivate) will have incurred many biases with respect to phenotypic characteristics and hence of genomic properties, and recent genomic evolution will also have been affected by human agricultural practices. BioMed Central 2016-11-11 /pmc/articles/PMC5123250/ /pubmed/28185558 http://dx.doi.org/10.1186/s12864-016-3100-9 Text en © The Author(s) 2016 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Vallée, Geneviève C.
Muñoz, Daniella Santos
Sankoff, David
Economic importance, taxonomic representation and scientific priority as drivers of genome sequencing projects
title Economic importance, taxonomic representation and scientific priority as drivers of genome sequencing projects
title_full Economic importance, taxonomic representation and scientific priority as drivers of genome sequencing projects
title_fullStr Economic importance, taxonomic representation and scientific priority as drivers of genome sequencing projects
title_full_unstemmed Economic importance, taxonomic representation and scientific priority as drivers of genome sequencing projects
title_short Economic importance, taxonomic representation and scientific priority as drivers of genome sequencing projects
title_sort economic importance, taxonomic representation and scientific priority as drivers of genome sequencing projects
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5123250/
https://www.ncbi.nlm.nih.gov/pubmed/28185558
http://dx.doi.org/10.1186/s12864-016-3100-9
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