Cargando…

Web-based Real-Time Case Finding for the Population Health Management of Patients With Diabetes Mellitus: A Prospective Validation of the Natural Language Processing–Based Algorithm With Statewide Electronic Medical Records

BACKGROUND: Diabetes case finding based on structured medical records does not fully identify diabetic patients whose medical histories related to diabetes are available in the form of free text. Manual chart reviews have been used but involve high labor costs and long latency. OBJECTIVE: This study...

Descripción completa

Detalles Bibliográficos
Autores principales: Zheng, Le, Wang, Yue, Hao, Shiying, Shin, Andrew Y, Jin, Bo, Ngo, Anh D, Jackson-Browne, Medina S, Feller, Daniel J, Fu, Tianyun, Zhang, Karena, Zhou, Xin, Zhu, Chunqing, Dai, Dorothy, Yu, Yunxian, Zheng, Gang, Li, Yu-Ming, McElhinney, Doff B, Culver, Devore S, Alfreds, Shaun T, Stearns, Frank, Sylvester, Karl G, Widen, Eric, Ling, Xuefeng Bruce
Formato: Online Artículo Texto
Lenguaje:English
Publicado: JMIR Publications 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5124114/
https://www.ncbi.nlm.nih.gov/pubmed/27836816
http://dx.doi.org/10.2196/medinform.6328
_version_ 1782469802737008640
author Zheng, Le
Wang, Yue
Hao, Shiying
Shin, Andrew Y
Jin, Bo
Ngo, Anh D
Jackson-Browne, Medina S
Feller, Daniel J
Fu, Tianyun
Zhang, Karena
Zhou, Xin
Zhu, Chunqing
Dai, Dorothy
Yu, Yunxian
Zheng, Gang
Li, Yu-Ming
McElhinney, Doff B
Culver, Devore S
Alfreds, Shaun T
Stearns, Frank
Sylvester, Karl G
Widen, Eric
Ling, Xuefeng Bruce
author_facet Zheng, Le
Wang, Yue
Hao, Shiying
Shin, Andrew Y
Jin, Bo
Ngo, Anh D
Jackson-Browne, Medina S
Feller, Daniel J
Fu, Tianyun
Zhang, Karena
Zhou, Xin
Zhu, Chunqing
Dai, Dorothy
Yu, Yunxian
Zheng, Gang
Li, Yu-Ming
McElhinney, Doff B
Culver, Devore S
Alfreds, Shaun T
Stearns, Frank
Sylvester, Karl G
Widen, Eric
Ling, Xuefeng Bruce
author_sort Zheng, Le
collection PubMed
description BACKGROUND: Diabetes case finding based on structured medical records does not fully identify diabetic patients whose medical histories related to diabetes are available in the form of free text. Manual chart reviews have been used but involve high labor costs and long latency. OBJECTIVE: This study developed and tested a Web-based diabetes case finding algorithm using both structured and unstructured electronic medical records (EMRs). METHODS: This study was based on the health information exchange (HIE) EMR database that covers almost all health facilities in the state of Maine, United States. Using narrative clinical notes, a Web-based natural language processing (NLP) case finding algorithm was retrospectively (July 1, 2012, to June 30, 2013) developed with a random subset of HIE-associated facilities, which was then blind tested with the remaining facilities. The NLP-based algorithm was subsequently integrated into the HIE database and validated prospectively (July 1, 2013, to June 30, 2014). RESULTS: Of the 935,891 patients in the prospective cohort, 64,168 diabetes cases were identified using diagnosis codes alone. Our NLP-based case finding algorithm prospectively found an additional 5756 uncodified cases (5756/64,168, 8.97% increase) with a positive predictive value of .90. Of the 21,720 diabetic patients identified by both methods, 6616 patients (6616/21,720, 30.46%) were identified by the NLP-based algorithm before a diabetes diagnosis was noted in the structured EMR (mean time difference = 48 days). CONCLUSIONS: The online NLP algorithm was effective in identifying uncodified diabetes cases in real time, leading to a significant improvement in diabetes case finding. The successful integration of the NLP-based case finding algorithm into the Maine HIE database indicates a strong potential for application of this novel method to achieve a more complete ascertainment of diagnoses of diabetes mellitus.
format Online
Article
Text
id pubmed-5124114
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher JMIR Publications
record_format MEDLINE/PubMed
spelling pubmed-51241142016-12-01 Web-based Real-Time Case Finding for the Population Health Management of Patients With Diabetes Mellitus: A Prospective Validation of the Natural Language Processing–Based Algorithm With Statewide Electronic Medical Records Zheng, Le Wang, Yue Hao, Shiying Shin, Andrew Y Jin, Bo Ngo, Anh D Jackson-Browne, Medina S Feller, Daniel J Fu, Tianyun Zhang, Karena Zhou, Xin Zhu, Chunqing Dai, Dorothy Yu, Yunxian Zheng, Gang Li, Yu-Ming McElhinney, Doff B Culver, Devore S Alfreds, Shaun T Stearns, Frank Sylvester, Karl G Widen, Eric Ling, Xuefeng Bruce JMIR Med Inform Original Paper BACKGROUND: Diabetes case finding based on structured medical records does not fully identify diabetic patients whose medical histories related to diabetes are available in the form of free text. Manual chart reviews have been used but involve high labor costs and long latency. OBJECTIVE: This study developed and tested a Web-based diabetes case finding algorithm using both structured and unstructured electronic medical records (EMRs). METHODS: This study was based on the health information exchange (HIE) EMR database that covers almost all health facilities in the state of Maine, United States. Using narrative clinical notes, a Web-based natural language processing (NLP) case finding algorithm was retrospectively (July 1, 2012, to June 30, 2013) developed with a random subset of HIE-associated facilities, which was then blind tested with the remaining facilities. The NLP-based algorithm was subsequently integrated into the HIE database and validated prospectively (July 1, 2013, to June 30, 2014). RESULTS: Of the 935,891 patients in the prospective cohort, 64,168 diabetes cases were identified using diagnosis codes alone. Our NLP-based case finding algorithm prospectively found an additional 5756 uncodified cases (5756/64,168, 8.97% increase) with a positive predictive value of .90. Of the 21,720 diabetic patients identified by both methods, 6616 patients (6616/21,720, 30.46%) were identified by the NLP-based algorithm before a diabetes diagnosis was noted in the structured EMR (mean time difference = 48 days). CONCLUSIONS: The online NLP algorithm was effective in identifying uncodified diabetes cases in real time, leading to a significant improvement in diabetes case finding. The successful integration of the NLP-based case finding algorithm into the Maine HIE database indicates a strong potential for application of this novel method to achieve a more complete ascertainment of diagnoses of diabetes mellitus. JMIR Publications 2016-11-11 /pmc/articles/PMC5124114/ /pubmed/27836816 http://dx.doi.org/10.2196/medinform.6328 Text en ©Le Zheng, Yue Wang, Shiying Hao, Andrew Y Shin, Bo Jin, Anh D Ngo, Medina S Jackson-Browne, Daniel J Feller, Tianyun Fu, Karena Zhang, Xin Zhou, Chunqing Zhu, Dorothy Dai, Yunxian Yu, Gang Zheng, Yu-Ming Li, Doff B McElhinney, Devore S Culver, Shaun T Alfreds, Frank Stearns, Karl G Sylvester, Eric Widen, Xuefeng Bruce Ling. Originally published in JMIR Medical Informatics (http://medinform.jmir.org), 11.11.2016. https://creativecommons.org/licenses/by/2.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0/ (https://creativecommons.org/licenses/by/2.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in JMIR Medical Informatics, is properly cited. The complete bibliographic information, a link to the original publication on http://medinform.jmir.org/, as well as this copyright and license information must be included.
spellingShingle Original Paper
Zheng, Le
Wang, Yue
Hao, Shiying
Shin, Andrew Y
Jin, Bo
Ngo, Anh D
Jackson-Browne, Medina S
Feller, Daniel J
Fu, Tianyun
Zhang, Karena
Zhou, Xin
Zhu, Chunqing
Dai, Dorothy
Yu, Yunxian
Zheng, Gang
Li, Yu-Ming
McElhinney, Doff B
Culver, Devore S
Alfreds, Shaun T
Stearns, Frank
Sylvester, Karl G
Widen, Eric
Ling, Xuefeng Bruce
Web-based Real-Time Case Finding for the Population Health Management of Patients With Diabetes Mellitus: A Prospective Validation of the Natural Language Processing–Based Algorithm With Statewide Electronic Medical Records
title Web-based Real-Time Case Finding for the Population Health Management of Patients With Diabetes Mellitus: A Prospective Validation of the Natural Language Processing–Based Algorithm With Statewide Electronic Medical Records
title_full Web-based Real-Time Case Finding for the Population Health Management of Patients With Diabetes Mellitus: A Prospective Validation of the Natural Language Processing–Based Algorithm With Statewide Electronic Medical Records
title_fullStr Web-based Real-Time Case Finding for the Population Health Management of Patients With Diabetes Mellitus: A Prospective Validation of the Natural Language Processing–Based Algorithm With Statewide Electronic Medical Records
title_full_unstemmed Web-based Real-Time Case Finding for the Population Health Management of Patients With Diabetes Mellitus: A Prospective Validation of the Natural Language Processing–Based Algorithm With Statewide Electronic Medical Records
title_short Web-based Real-Time Case Finding for the Population Health Management of Patients With Diabetes Mellitus: A Prospective Validation of the Natural Language Processing–Based Algorithm With Statewide Electronic Medical Records
title_sort web-based real-time case finding for the population health management of patients with diabetes mellitus: a prospective validation of the natural language processing–based algorithm with statewide electronic medical records
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5124114/
https://www.ncbi.nlm.nih.gov/pubmed/27836816
http://dx.doi.org/10.2196/medinform.6328
work_keys_str_mv AT zhengle webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT wangyue webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT haoshiying webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT shinandrewy webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT jinbo webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT ngoanhd webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT jacksonbrownemedinas webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT fellerdanielj webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT futianyun webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT zhangkarena webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT zhouxin webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT zhuchunqing webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT daidorothy webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT yuyunxian webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT zhenggang webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT liyuming webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT mcelhinneydoffb webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT culverdevores webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT alfredsshaunt webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT stearnsfrank webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT sylvesterkarlg webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT wideneric webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords
AT lingxuefengbruce webbasedrealtimecasefindingforthepopulationhealthmanagementofpatientswithdiabetesmellitusaprospectivevalidationofthenaturallanguageprocessingbasedalgorithmwithstatewideelectronicmedicalrecords