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Web-based Real-Time Case Finding for the Population Health Management of Patients With Diabetes Mellitus: A Prospective Validation of the Natural Language Processing–Based Algorithm With Statewide Electronic Medical Records
BACKGROUND: Diabetes case finding based on structured medical records does not fully identify diabetic patients whose medical histories related to diabetes are available in the form of free text. Manual chart reviews have been used but involve high labor costs and long latency. OBJECTIVE: This study...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
JMIR Publications
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5124114/ https://www.ncbi.nlm.nih.gov/pubmed/27836816 http://dx.doi.org/10.2196/medinform.6328 |
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author | Zheng, Le Wang, Yue Hao, Shiying Shin, Andrew Y Jin, Bo Ngo, Anh D Jackson-Browne, Medina S Feller, Daniel J Fu, Tianyun Zhang, Karena Zhou, Xin Zhu, Chunqing Dai, Dorothy Yu, Yunxian Zheng, Gang Li, Yu-Ming McElhinney, Doff B Culver, Devore S Alfreds, Shaun T Stearns, Frank Sylvester, Karl G Widen, Eric Ling, Xuefeng Bruce |
author_facet | Zheng, Le Wang, Yue Hao, Shiying Shin, Andrew Y Jin, Bo Ngo, Anh D Jackson-Browne, Medina S Feller, Daniel J Fu, Tianyun Zhang, Karena Zhou, Xin Zhu, Chunqing Dai, Dorothy Yu, Yunxian Zheng, Gang Li, Yu-Ming McElhinney, Doff B Culver, Devore S Alfreds, Shaun T Stearns, Frank Sylvester, Karl G Widen, Eric Ling, Xuefeng Bruce |
author_sort | Zheng, Le |
collection | PubMed |
description | BACKGROUND: Diabetes case finding based on structured medical records does not fully identify diabetic patients whose medical histories related to diabetes are available in the form of free text. Manual chart reviews have been used but involve high labor costs and long latency. OBJECTIVE: This study developed and tested a Web-based diabetes case finding algorithm using both structured and unstructured electronic medical records (EMRs). METHODS: This study was based on the health information exchange (HIE) EMR database that covers almost all health facilities in the state of Maine, United States. Using narrative clinical notes, a Web-based natural language processing (NLP) case finding algorithm was retrospectively (July 1, 2012, to June 30, 2013) developed with a random subset of HIE-associated facilities, which was then blind tested with the remaining facilities. The NLP-based algorithm was subsequently integrated into the HIE database and validated prospectively (July 1, 2013, to June 30, 2014). RESULTS: Of the 935,891 patients in the prospective cohort, 64,168 diabetes cases were identified using diagnosis codes alone. Our NLP-based case finding algorithm prospectively found an additional 5756 uncodified cases (5756/64,168, 8.97% increase) with a positive predictive value of .90. Of the 21,720 diabetic patients identified by both methods, 6616 patients (6616/21,720, 30.46%) were identified by the NLP-based algorithm before a diabetes diagnosis was noted in the structured EMR (mean time difference = 48 days). CONCLUSIONS: The online NLP algorithm was effective in identifying uncodified diabetes cases in real time, leading to a significant improvement in diabetes case finding. The successful integration of the NLP-based case finding algorithm into the Maine HIE database indicates a strong potential for application of this novel method to achieve a more complete ascertainment of diagnoses of diabetes mellitus. |
format | Online Article Text |
id | pubmed-5124114 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | JMIR Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-51241142016-12-01 Web-based Real-Time Case Finding for the Population Health Management of Patients With Diabetes Mellitus: A Prospective Validation of the Natural Language Processing–Based Algorithm With Statewide Electronic Medical Records Zheng, Le Wang, Yue Hao, Shiying Shin, Andrew Y Jin, Bo Ngo, Anh D Jackson-Browne, Medina S Feller, Daniel J Fu, Tianyun Zhang, Karena Zhou, Xin Zhu, Chunqing Dai, Dorothy Yu, Yunxian Zheng, Gang Li, Yu-Ming McElhinney, Doff B Culver, Devore S Alfreds, Shaun T Stearns, Frank Sylvester, Karl G Widen, Eric Ling, Xuefeng Bruce JMIR Med Inform Original Paper BACKGROUND: Diabetes case finding based on structured medical records does not fully identify diabetic patients whose medical histories related to diabetes are available in the form of free text. Manual chart reviews have been used but involve high labor costs and long latency. OBJECTIVE: This study developed and tested a Web-based diabetes case finding algorithm using both structured and unstructured electronic medical records (EMRs). METHODS: This study was based on the health information exchange (HIE) EMR database that covers almost all health facilities in the state of Maine, United States. Using narrative clinical notes, a Web-based natural language processing (NLP) case finding algorithm was retrospectively (July 1, 2012, to June 30, 2013) developed with a random subset of HIE-associated facilities, which was then blind tested with the remaining facilities. The NLP-based algorithm was subsequently integrated into the HIE database and validated prospectively (July 1, 2013, to June 30, 2014). RESULTS: Of the 935,891 patients in the prospective cohort, 64,168 diabetes cases were identified using diagnosis codes alone. Our NLP-based case finding algorithm prospectively found an additional 5756 uncodified cases (5756/64,168, 8.97% increase) with a positive predictive value of .90. Of the 21,720 diabetic patients identified by both methods, 6616 patients (6616/21,720, 30.46%) were identified by the NLP-based algorithm before a diabetes diagnosis was noted in the structured EMR (mean time difference = 48 days). CONCLUSIONS: The online NLP algorithm was effective in identifying uncodified diabetes cases in real time, leading to a significant improvement in diabetes case finding. The successful integration of the NLP-based case finding algorithm into the Maine HIE database indicates a strong potential for application of this novel method to achieve a more complete ascertainment of diagnoses of diabetes mellitus. JMIR Publications 2016-11-11 /pmc/articles/PMC5124114/ /pubmed/27836816 http://dx.doi.org/10.2196/medinform.6328 Text en ©Le Zheng, Yue Wang, Shiying Hao, Andrew Y Shin, Bo Jin, Anh D Ngo, Medina S Jackson-Browne, Daniel J Feller, Tianyun Fu, Karena Zhang, Xin Zhou, Chunqing Zhu, Dorothy Dai, Yunxian Yu, Gang Zheng, Yu-Ming Li, Doff B McElhinney, Devore S Culver, Shaun T Alfreds, Frank Stearns, Karl G Sylvester, Eric Widen, Xuefeng Bruce Ling. Originally published in JMIR Medical Informatics (http://medinform.jmir.org), 11.11.2016. https://creativecommons.org/licenses/by/2.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0/ (https://creativecommons.org/licenses/by/2.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in JMIR Medical Informatics, is properly cited. The complete bibliographic information, a link to the original publication on http://medinform.jmir.org/, as well as this copyright and license information must be included. |
spellingShingle | Original Paper Zheng, Le Wang, Yue Hao, Shiying Shin, Andrew Y Jin, Bo Ngo, Anh D Jackson-Browne, Medina S Feller, Daniel J Fu, Tianyun Zhang, Karena Zhou, Xin Zhu, Chunqing Dai, Dorothy Yu, Yunxian Zheng, Gang Li, Yu-Ming McElhinney, Doff B Culver, Devore S Alfreds, Shaun T Stearns, Frank Sylvester, Karl G Widen, Eric Ling, Xuefeng Bruce Web-based Real-Time Case Finding for the Population Health Management of Patients With Diabetes Mellitus: A Prospective Validation of the Natural Language Processing–Based Algorithm With Statewide Electronic Medical Records |
title | Web-based Real-Time Case Finding for the Population Health Management of Patients With Diabetes Mellitus: A Prospective Validation of the Natural Language Processing–Based Algorithm With Statewide Electronic Medical Records |
title_full | Web-based Real-Time Case Finding for the Population Health Management of Patients With Diabetes Mellitus: A Prospective Validation of the Natural Language Processing–Based Algorithm With Statewide Electronic Medical Records |
title_fullStr | Web-based Real-Time Case Finding for the Population Health Management of Patients With Diabetes Mellitus: A Prospective Validation of the Natural Language Processing–Based Algorithm With Statewide Electronic Medical Records |
title_full_unstemmed | Web-based Real-Time Case Finding for the Population Health Management of Patients With Diabetes Mellitus: A Prospective Validation of the Natural Language Processing–Based Algorithm With Statewide Electronic Medical Records |
title_short | Web-based Real-Time Case Finding for the Population Health Management of Patients With Diabetes Mellitus: A Prospective Validation of the Natural Language Processing–Based Algorithm With Statewide Electronic Medical Records |
title_sort | web-based real-time case finding for the population health management of patients with diabetes mellitus: a prospective validation of the natural language processing–based algorithm with statewide electronic medical records |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5124114/ https://www.ncbi.nlm.nih.gov/pubmed/27836816 http://dx.doi.org/10.2196/medinform.6328 |
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