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Learning stochastic finite-state transducer to predict individual patient outcomes

The high frequency data in intensive care unit is flashed on a screen for a few seconds and never used again. However, this data can be used by machine learning and data mining techniques to predict patient outcomes. Learning finite-state transducers (FSTs) have been widely used in problems where se...

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Autores principales: Ordoñez, Patricia, Schwarz, Nelson, Figueroa-Jiménez, Adnel, Garcia-Lebron, Leonardo A., Roche-Lima, Abiel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5124435/
https://www.ncbi.nlm.nih.gov/pubmed/27942425
http://dx.doi.org/10.1007/s12553-016-0146-2
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author Ordoñez, Patricia
Schwarz, Nelson
Figueroa-Jiménez, Adnel
Garcia-Lebron, Leonardo A.
Roche-Lima, Abiel
author_facet Ordoñez, Patricia
Schwarz, Nelson
Figueroa-Jiménez, Adnel
Garcia-Lebron, Leonardo A.
Roche-Lima, Abiel
author_sort Ordoñez, Patricia
collection PubMed
description The high frequency data in intensive care unit is flashed on a screen for a few seconds and never used again. However, this data can be used by machine learning and data mining techniques to predict patient outcomes. Learning finite-state transducers (FSTs) have been widely used in problems where sequences need to be manipulated and insertions, deletions and substitutions need to be modeled. In this paper, we learned the edit distance costs of a symbolic univariate time series representation through a stochastic finite-state transducer to predict patient outcomes in intensive care units. The Nearest-Neighbor method with these learned costs was used to classify the patient status within an hour after 10 h of data. Several experiments were developed to estimate the parameters that better fit the model regarding the prediction metrics. Our best results are compared with published works, where most of the metrics (i.e., Accuracy, Precision and F-measure) were improved.
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spelling pubmed-51244352016-12-09 Learning stochastic finite-state transducer to predict individual patient outcomes Ordoñez, Patricia Schwarz, Nelson Figueroa-Jiménez, Adnel Garcia-Lebron, Leonardo A. Roche-Lima, Abiel Health Technol (Berl) Original Paper The high frequency data in intensive care unit is flashed on a screen for a few seconds and never used again. However, this data can be used by machine learning and data mining techniques to predict patient outcomes. Learning finite-state transducers (FSTs) have been widely used in problems where sequences need to be manipulated and insertions, deletions and substitutions need to be modeled. In this paper, we learned the edit distance costs of a symbolic univariate time series representation through a stochastic finite-state transducer to predict patient outcomes in intensive care units. The Nearest-Neighbor method with these learned costs was used to classify the patient status within an hour after 10 h of data. Several experiments were developed to estimate the parameters that better fit the model regarding the prediction metrics. Our best results are compared with published works, where most of the metrics (i.e., Accuracy, Precision and F-measure) were improved. Springer Berlin Heidelberg 2016-10-17 2016 /pmc/articles/PMC5124435/ /pubmed/27942425 http://dx.doi.org/10.1007/s12553-016-0146-2 Text en © The Author(s) 2016 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Original Paper
Ordoñez, Patricia
Schwarz, Nelson
Figueroa-Jiménez, Adnel
Garcia-Lebron, Leonardo A.
Roche-Lima, Abiel
Learning stochastic finite-state transducer to predict individual patient outcomes
title Learning stochastic finite-state transducer to predict individual patient outcomes
title_full Learning stochastic finite-state transducer to predict individual patient outcomes
title_fullStr Learning stochastic finite-state transducer to predict individual patient outcomes
title_full_unstemmed Learning stochastic finite-state transducer to predict individual patient outcomes
title_short Learning stochastic finite-state transducer to predict individual patient outcomes
title_sort learning stochastic finite-state transducer to predict individual patient outcomes
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5124435/
https://www.ncbi.nlm.nih.gov/pubmed/27942425
http://dx.doi.org/10.1007/s12553-016-0146-2
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