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Improving Estimation of Fiber Orientations in Diffusion MRI Using Inter-Subject Information Sharing

Diffusion magnetic resonance imaging is widely used to investigate diffusion patterns of water molecules in the human brain. It provides information that is useful for tracing axonal bundles and inferring brain connectivity. Diffusion axonal tracing, namely tractography, relies on local directional...

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Autores principales: Chen, Geng, Zhang, Pei, Li, Ke, Wee, Chong-Yaw, Wu, Yafeng, Shen, Dinggang, Yap, Pew-Thian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5124958/
https://www.ncbi.nlm.nih.gov/pubmed/27892534
http://dx.doi.org/10.1038/srep37847
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author Chen, Geng
Zhang, Pei
Li, Ke
Wee, Chong-Yaw
Wu, Yafeng
Shen, Dinggang
Yap, Pew-Thian
author_facet Chen, Geng
Zhang, Pei
Li, Ke
Wee, Chong-Yaw
Wu, Yafeng
Shen, Dinggang
Yap, Pew-Thian
author_sort Chen, Geng
collection PubMed
description Diffusion magnetic resonance imaging is widely used to investigate diffusion patterns of water molecules in the human brain. It provides information that is useful for tracing axonal bundles and inferring brain connectivity. Diffusion axonal tracing, namely tractography, relies on local directional information provided by the orientation distribution functions (ODFs) estimated at each voxel. To accurately estimate ODFs, data of good signal-to-noise ratio and sufficient angular samples are desired. This is however not always available in practice. In this paper, we propose to improve ODF estimation by using inter-subject image correlation. Specifically, we demonstrate that diffusion-weighted images acquired from different subjects can be transformed to the space of a target subject to drastically increase the number of angular samples to improve ODF estimation. This is largely due to the incoherence of the angular samples generated when the diffusion signals are reoriented and warped to the target space. To reorient the diffusion signals, we propose a new spatial normalization method that directly acts on diffusion signals using local affine transforms. Experiments on both synthetic data and real data show that our method can reduce noise-induced artifacts, such as spurious ODF peaks, and yield more coherent orientations.
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spelling pubmed-51249582016-12-08 Improving Estimation of Fiber Orientations in Diffusion MRI Using Inter-Subject Information Sharing Chen, Geng Zhang, Pei Li, Ke Wee, Chong-Yaw Wu, Yafeng Shen, Dinggang Yap, Pew-Thian Sci Rep Article Diffusion magnetic resonance imaging is widely used to investigate diffusion patterns of water molecules in the human brain. It provides information that is useful for tracing axonal bundles and inferring brain connectivity. Diffusion axonal tracing, namely tractography, relies on local directional information provided by the orientation distribution functions (ODFs) estimated at each voxel. To accurately estimate ODFs, data of good signal-to-noise ratio and sufficient angular samples are desired. This is however not always available in practice. In this paper, we propose to improve ODF estimation by using inter-subject image correlation. Specifically, we demonstrate that diffusion-weighted images acquired from different subjects can be transformed to the space of a target subject to drastically increase the number of angular samples to improve ODF estimation. This is largely due to the incoherence of the angular samples generated when the diffusion signals are reoriented and warped to the target space. To reorient the diffusion signals, we propose a new spatial normalization method that directly acts on diffusion signals using local affine transforms. Experiments on both synthetic data and real data show that our method can reduce noise-induced artifacts, such as spurious ODF peaks, and yield more coherent orientations. Nature Publishing Group 2016-11-28 /pmc/articles/PMC5124958/ /pubmed/27892534 http://dx.doi.org/10.1038/srep37847 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Chen, Geng
Zhang, Pei
Li, Ke
Wee, Chong-Yaw
Wu, Yafeng
Shen, Dinggang
Yap, Pew-Thian
Improving Estimation of Fiber Orientations in Diffusion MRI Using Inter-Subject Information Sharing
title Improving Estimation of Fiber Orientations in Diffusion MRI Using Inter-Subject Information Sharing
title_full Improving Estimation of Fiber Orientations in Diffusion MRI Using Inter-Subject Information Sharing
title_fullStr Improving Estimation of Fiber Orientations in Diffusion MRI Using Inter-Subject Information Sharing
title_full_unstemmed Improving Estimation of Fiber Orientations in Diffusion MRI Using Inter-Subject Information Sharing
title_short Improving Estimation of Fiber Orientations in Diffusion MRI Using Inter-Subject Information Sharing
title_sort improving estimation of fiber orientations in diffusion mri using inter-subject information sharing
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5124958/
https://www.ncbi.nlm.nih.gov/pubmed/27892534
http://dx.doi.org/10.1038/srep37847
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