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Improving Estimation of Fiber Orientations in Diffusion MRI Using Inter-Subject Information Sharing
Diffusion magnetic resonance imaging is widely used to investigate diffusion patterns of water molecules in the human brain. It provides information that is useful for tracing axonal bundles and inferring brain connectivity. Diffusion axonal tracing, namely tractography, relies on local directional...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5124958/ https://www.ncbi.nlm.nih.gov/pubmed/27892534 http://dx.doi.org/10.1038/srep37847 |
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author | Chen, Geng Zhang, Pei Li, Ke Wee, Chong-Yaw Wu, Yafeng Shen, Dinggang Yap, Pew-Thian |
author_facet | Chen, Geng Zhang, Pei Li, Ke Wee, Chong-Yaw Wu, Yafeng Shen, Dinggang Yap, Pew-Thian |
author_sort | Chen, Geng |
collection | PubMed |
description | Diffusion magnetic resonance imaging is widely used to investigate diffusion patterns of water molecules in the human brain. It provides information that is useful for tracing axonal bundles and inferring brain connectivity. Diffusion axonal tracing, namely tractography, relies on local directional information provided by the orientation distribution functions (ODFs) estimated at each voxel. To accurately estimate ODFs, data of good signal-to-noise ratio and sufficient angular samples are desired. This is however not always available in practice. In this paper, we propose to improve ODF estimation by using inter-subject image correlation. Specifically, we demonstrate that diffusion-weighted images acquired from different subjects can be transformed to the space of a target subject to drastically increase the number of angular samples to improve ODF estimation. This is largely due to the incoherence of the angular samples generated when the diffusion signals are reoriented and warped to the target space. To reorient the diffusion signals, we propose a new spatial normalization method that directly acts on diffusion signals using local affine transforms. Experiments on both synthetic data and real data show that our method can reduce noise-induced artifacts, such as spurious ODF peaks, and yield more coherent orientations. |
format | Online Article Text |
id | pubmed-5124958 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-51249582016-12-08 Improving Estimation of Fiber Orientations in Diffusion MRI Using Inter-Subject Information Sharing Chen, Geng Zhang, Pei Li, Ke Wee, Chong-Yaw Wu, Yafeng Shen, Dinggang Yap, Pew-Thian Sci Rep Article Diffusion magnetic resonance imaging is widely used to investigate diffusion patterns of water molecules in the human brain. It provides information that is useful for tracing axonal bundles and inferring brain connectivity. Diffusion axonal tracing, namely tractography, relies on local directional information provided by the orientation distribution functions (ODFs) estimated at each voxel. To accurately estimate ODFs, data of good signal-to-noise ratio and sufficient angular samples are desired. This is however not always available in practice. In this paper, we propose to improve ODF estimation by using inter-subject image correlation. Specifically, we demonstrate that diffusion-weighted images acquired from different subjects can be transformed to the space of a target subject to drastically increase the number of angular samples to improve ODF estimation. This is largely due to the incoherence of the angular samples generated when the diffusion signals are reoriented and warped to the target space. To reorient the diffusion signals, we propose a new spatial normalization method that directly acts on diffusion signals using local affine transforms. Experiments on both synthetic data and real data show that our method can reduce noise-induced artifacts, such as spurious ODF peaks, and yield more coherent orientations. Nature Publishing Group 2016-11-28 /pmc/articles/PMC5124958/ /pubmed/27892534 http://dx.doi.org/10.1038/srep37847 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Chen, Geng Zhang, Pei Li, Ke Wee, Chong-Yaw Wu, Yafeng Shen, Dinggang Yap, Pew-Thian Improving Estimation of Fiber Orientations in Diffusion MRI Using Inter-Subject Information Sharing |
title | Improving Estimation of Fiber Orientations in Diffusion MRI Using Inter-Subject Information Sharing |
title_full | Improving Estimation of Fiber Orientations in Diffusion MRI Using Inter-Subject Information Sharing |
title_fullStr | Improving Estimation of Fiber Orientations in Diffusion MRI Using Inter-Subject Information Sharing |
title_full_unstemmed | Improving Estimation of Fiber Orientations in Diffusion MRI Using Inter-Subject Information Sharing |
title_short | Improving Estimation of Fiber Orientations in Diffusion MRI Using Inter-Subject Information Sharing |
title_sort | improving estimation of fiber orientations in diffusion mri using inter-subject information sharing |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5124958/ https://www.ncbi.nlm.nih.gov/pubmed/27892534 http://dx.doi.org/10.1038/srep37847 |
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