Cargando…

Single Amino Acid Repeats in the Proteome World: Structural, Functional, and Evolutionary Insights

Microsatellites or simple sequence repeats (SSR) are abundant, highly diverse stretches of short DNA repeats present in all genomes. Tandem mono/tri/hexanucleotide repeats in the coding regions contribute to single amino acids repeats (SAARs) in the proteome. While SSRs in the coding region always r...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kumar, Amitha Sampath, Sowpati, Divya Tej, Mishra, Rakesh K.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2016
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5125637/ https://www.ncbi.nlm.nih.gov/pubmed/27893794 http://dx.doi.org/10.1371/journal.pone.0166854

Ejemplares similares

MSDB: A Comprehensive Database of Simple Sequence Repeats
por: Avvaru, Akshay Kumar, et al.
Publicado: (2017)

Patterns of microsatellite distribution across eukaryotic genomes
por: Srivastava, Surabhi, et al.
Publicado: (2019)

Structural and developmental dynamics of Matrix associated regions in Drosophila melanogaster genome
por: Sureka, Rahul, et al.
Publicado: (2022)

C-State: an interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search
por: Sowpati, Divya Tej, et al.
Publicado: (2017)

Interplay of pericentromeric genome organization and chromatin landscape regulates the expression of Drosophila melanogaster heterochromatic genes
por: Saha, Parna, et al.
Publicado: (2020)

MSDB: a comprehensive, annotated database of microsatellites
por: Avvaru, Akshay Kumar, et al.
Publicado: (2020)

Long-Read Genome Sequencing and Assembly of Leptopilina boulardi: A Specialist Drosophila Parasitoid
por: Khan, Shagufta, et al.
Publicado: (2020)

SARS-CoV-2 genomics: An Indian perspective on sequencing viral variants
por: Srivastava, Surabhi, et al.
Publicado: (2021)

Transcriptomic dataset of zebrafish tissues following chronic alcohol exposure and withdrawal
por: Banu, Sofia, et al.
Publicado: (2020)

COPASAAR – A database for proteomic analysis of single amino acid repeats
por: Depledge, Daniel P, et al.
Publicado: (2005)

A ChIP-on-chip tiling array approach detects functional histone-free regions associated with boundaries at vertebrate HOX genes
por: Srivastava, Surabhi, et al.
Publicado: (2014)

Mutation patterns of amino acid tandem repeats in the human proteome
por: Mularoni, Loris, et al.
Publicado: (2006)

Genome-wide non-CpG methylation of the host genome during M. tuberculosis infection
por: Sharma, Garima, et al.
Publicado: (2016)

A Comparative Proteomic Analysis of the Simple Amino Acid Repeat Distributions in Plasmodia Reveals Lineage Specific Amino Acid Selection
por: Dalby, Andrew R.
Publicado: (2009)

Proteome-Wide Structural Computations Provide Insights into Empirical Amino Acid Substitution Matrices
por: Aledo, Pablo, et al.
Publicado: (2023)

Evolutionary proteomics identifies amino acids essential for ligand-binding of the cytokinin receptor CHASE domain
por: Heyl, Alexander, et al.
Publicado: (2007)

Compound Dynamics and Combinatorial Patterns of Amino Acid Repeats Encode a System of Evolutionary and Developmental Markers
por: Pelassa, Ilaria, et al.
Publicado: (2019)

The unique N-terminal region of Mycobacterium tuberculosis sigma factor A plays a dominant role in the essential function of this protein
por: Singha, Biplab, et al.
Publicado: (2023)

SARS-CoV-2 Variant Delta Potently Suppresses Innate Immune Response and Evades Interferon-Activated Antiviral Responses in Human Colon Epithelial Cells
por: Tandel, Dixit, et al.
Publicado: (2022)

Evidence of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Reinfection Without Mutations in the Spike Protein
por: Kulkarni, Onkar, et al.
Publicado: (2021)

Understanding and identifying amino acid repeats
por: Luo, Hong, et al.
Publicado: (2014)

On the Evolutionary History of the Twenty Encoded Amino Acids
por: Kirschning, Andreas
Publicado: (2022)

ProtRepeatsDB: a database of amino acid repeats in genomes
por: Kalita, Mridul K, et al.
Publicado: (2006)

An analysis of single amino acid repeats as use case for application specific background models
por: Łabaj, Paweł P, et al.
Publicado: (2011)

C3G Regulates STAT3, ERK, Adhesion Signaling, and Is Essential for Differentiation of Embryonic Stem Cells
por: Vishnu, Vijay V., et al.
Publicado: (2021)

Widespread adaptive evolution during repeated evolutionary radiations in New World lupins
por: Nevado, Bruno, et al.
Publicado: (2016)

ProRepeat: an integrated repository for studying amino acid tandem repeats in proteins
por: Luo, Hong, et al.
Publicado: (2012)

Identification and Analysis of Novel Amino-Acid Sequence Repeats in Bacillus anthracis str. Ames Proteome Using Computational Tools
por: Hemalatha, G. R., et al.
Publicado: (2007)

An Analytical Review of the Structural Features of Pentatricopeptide Repeats: Strategic Amino Acids, Repeat Arrangements and Superhelical Architecture
por: Barik, Sailen
Publicado: (2021)

Structural Insights into the Dual Strategy of Recognition by Peptidoglycan Recognition Protein, PGRP-S: Structure of the Ternary Complex of PGRP-S with Lipopolysaccharide and Stearic Acid
por: Sharma, Pradeep, et al.
Publicado: (2013)

Mass & secondary structure propensity of amino acids explain their mutability and evolutionary replacements
por: Bohórquez, Hugo J., et al.
Publicado: (2017)

Host transcriptional response to SARS‐CoV‐2 infection in COVID‐19 patients
por: Singh, Nitesh Kumar, et al.
Publicado: (2021)

Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome
por: Boyko, Adam R., et al.
Publicado: (2008)

Evolutionary Systems Biology of Amino Acid Biosynthetic Cost in Yeast
por: Barton, Michael D., et al.
Publicado: (2010)

Evolutionary patterns of amino acid substitutions in 12 Drosophila genomes
por: Yampolsky, Lev Y, et al.
Publicado: (2010)

Repeated exposure of acidic beverages on esthetic restorative materials: An in-vitro surface microhardness study
por: Xavier, Arun M., et al.
Publicado: (2016)

Search for Highly Divergent Tandem Repeats in Amino Acid Sequences
por: Rudenko, Valentina, et al.
Publicado: (2021)

Success: evolutionary and structural properties of amino acids prove effective for succinylation site prediction
por: López, Yosvany, et al.
Publicado: (2018)

Non-canonical amino acid labeling in proteomics and biotechnology
por: Saleh, Aya M., et al.
Publicado: (2019)

Effects of amino acids on the lignocellulose degradation by Aspergillus fumigatus Z5: insights into performance, transcriptional, and proteomic profiles
por: Miao, Jiaxi, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_jd9e9uirq27sqt3fdfv02qje0a