Complete genome anatomy of the emerging potato pathogen Dickeya solani type strain IPO 2222(T)

Several species of the genus Dickeya provoke soft rot and blackleg diseases on a wide range of plants and crops. Dickeya solani has been identified as the causative agent of diseases outbreaks on potato culture in Europe for the last decade. Here, we report the complete genome of the D. solani IPO 2...

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Autores principales: Khayi, Slimane, Blin, Pauline, Chong, Teik Min, Chan, Kok-Gan, Faure, Denis
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Short Genome Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5127095/
https://www.ncbi.nlm.nih.gov/pubmed/27942352
http://dx.doi.org/10.1186/s40793-016-0208-0
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author Khayi, Slimane
Blin, Pauline
Chong, Teik Min
Chan, Kok-Gan
Faure, Denis
author_facet Khayi, Slimane
Blin, Pauline
Chong, Teik Min
Chan, Kok-Gan
Faure, Denis
author_sort Khayi, Slimane
collection PubMed
description Several species of the genus Dickeya provoke soft rot and blackleg diseases on a wide range of plants and crops. Dickeya solani has been identified as the causative agent of diseases outbreaks on potato culture in Europe for the last decade. Here, we report the complete genome of the D. solani IPO 2222(T). Using PacBio and Illumina technologies, a unique circular chromosome of 4,919,833 bp was assembled. The G + C content reaches 56% and the genomic sequence contains 4,059 predicted proteins. The ANI values calculated for D. solani IPO 2222(T) vs. other available D. solani genomes was over 99.9% indicating a high genetic homogeneity within D. solani species. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-016-0208-0) contains supplementary material, which is available to authorized users.
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spelling pubmed-51270952016-12-09 Complete genome anatomy of the emerging potato pathogen Dickeya solani type strain IPO 2222(T) Khayi, Slimane Blin, Pauline Chong, Teik Min Chan, Kok-Gan Faure, Denis Stand Genomic Sci Short Genome Report Several species of the genus Dickeya provoke soft rot and blackleg diseases on a wide range of plants and crops. Dickeya solani has been identified as the causative agent of diseases outbreaks on potato culture in Europe for the last decade. Here, we report the complete genome of the D. solani IPO 2222(T). Using PacBio and Illumina technologies, a unique circular chromosome of 4,919,833 bp was assembled. The G + C content reaches 56% and the genomic sequence contains 4,059 predicted proteins. The ANI values calculated for D. solani IPO 2222(T) vs. other available D. solani genomes was over 99.9% indicating a high genetic homogeneity within D. solani species. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-016-0208-0) contains supplementary material, which is available to authorized users. BioMed Central 2016-11-29 /pmc/articles/PMC5127095/ /pubmed/27942352 http://dx.doi.org/10.1186/s40793-016-0208-0 Text en © The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Khayi, Slimane
Blin, Pauline
Chong, Teik Min
Chan, Kok-Gan
Faure, Denis
Complete genome anatomy of the emerging potato pathogen Dickeya solani type strain IPO 2222(T)
title Complete genome anatomy of the emerging potato pathogen Dickeya solani type strain IPO 2222(T)
title_full Complete genome anatomy of the emerging potato pathogen Dickeya solani type strain IPO 2222(T)
title_fullStr Complete genome anatomy of the emerging potato pathogen Dickeya solani type strain IPO 2222(T)
title_full_unstemmed Complete genome anatomy of the emerging potato pathogen Dickeya solani type strain IPO 2222(T)
title_short Complete genome anatomy of the emerging potato pathogen Dickeya solani type strain IPO 2222(T)
title_sort complete genome anatomy of the emerging potato pathogen dickeya solani type strain ipo 2222(t)
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5127095/
https://www.ncbi.nlm.nih.gov/pubmed/27942352
http://dx.doi.org/10.1186/s40793-016-0208-0
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