Cargando…

The Multivariate Temporal Response Function (mTRF) Toolbox: A MATLAB Toolbox for Relating Neural Signals to Continuous Stimuli

Understanding how brains process sensory signals in natural environments is one of the key goals of twenty-first century neuroscience. While brain imaging and invasive electrophysiology will play key roles in this endeavor, there is also an important role to be played by noninvasive, macroscopic tec...

Descripción completa

Detalles Bibliográficos
Autores principales: Crosse, Michael J., Di Liberto, Giovanni M., Bednar, Adam, Lalor, Edmund C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5127806/
https://www.ncbi.nlm.nih.gov/pubmed/27965557
http://dx.doi.org/10.3389/fnhum.2016.00604
_version_ 1782470286335016960
author Crosse, Michael J.
Di Liberto, Giovanni M.
Bednar, Adam
Lalor, Edmund C.
author_facet Crosse, Michael J.
Di Liberto, Giovanni M.
Bednar, Adam
Lalor, Edmund C.
author_sort Crosse, Michael J.
collection PubMed
description Understanding how brains process sensory signals in natural environments is one of the key goals of twenty-first century neuroscience. While brain imaging and invasive electrophysiology will play key roles in this endeavor, there is also an important role to be played by noninvasive, macroscopic techniques with high temporal resolution such as electro- and magnetoencephalography. But challenges exist in determining how best to analyze such complex, time-varying neural responses to complex, time-varying and multivariate natural sensory stimuli. There has been a long history of applying system identification techniques to relate the firing activity of neurons to complex sensory stimuli and such techniques are now seeing increased application to EEG and MEG data. One particular example involves fitting a filter—often referred to as a temporal response function—that describes a mapping between some feature(s) of a sensory stimulus and the neural response. Here, we first briefly review the history of these system identification approaches and describe a specific technique for deriving temporal response functions known as regularized linear regression. We then introduce a new open-source toolbox for performing this analysis. We describe how it can be used to derive (multivariate) temporal response functions describing a mapping between stimulus and response in both directions. We also explain the importance of regularizing the analysis and how this regularization can be optimized for a particular dataset. We then outline specifically how the toolbox implements these analyses and provide several examples of the types of results that the toolbox can produce. Finally, we consider some of the limitations of the toolbox and opportunities for future development and application.
format Online
Article
Text
id pubmed-5127806
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-51278062016-12-13 The Multivariate Temporal Response Function (mTRF) Toolbox: A MATLAB Toolbox for Relating Neural Signals to Continuous Stimuli Crosse, Michael J. Di Liberto, Giovanni M. Bednar, Adam Lalor, Edmund C. Front Hum Neurosci Neuroscience Understanding how brains process sensory signals in natural environments is one of the key goals of twenty-first century neuroscience. While brain imaging and invasive electrophysiology will play key roles in this endeavor, there is also an important role to be played by noninvasive, macroscopic techniques with high temporal resolution such as electro- and magnetoencephalography. But challenges exist in determining how best to analyze such complex, time-varying neural responses to complex, time-varying and multivariate natural sensory stimuli. There has been a long history of applying system identification techniques to relate the firing activity of neurons to complex sensory stimuli and such techniques are now seeing increased application to EEG and MEG data. One particular example involves fitting a filter—often referred to as a temporal response function—that describes a mapping between some feature(s) of a sensory stimulus and the neural response. Here, we first briefly review the history of these system identification approaches and describe a specific technique for deriving temporal response functions known as regularized linear regression. We then introduce a new open-source toolbox for performing this analysis. We describe how it can be used to derive (multivariate) temporal response functions describing a mapping between stimulus and response in both directions. We also explain the importance of regularizing the analysis and how this regularization can be optimized for a particular dataset. We then outline specifically how the toolbox implements these analyses and provide several examples of the types of results that the toolbox can produce. Finally, we consider some of the limitations of the toolbox and opportunities for future development and application. Frontiers Media S.A. 2016-11-30 /pmc/articles/PMC5127806/ /pubmed/27965557 http://dx.doi.org/10.3389/fnhum.2016.00604 Text en Copyright © 2016 Crosse, Di Liberto, Bednar and Lalor. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Crosse, Michael J.
Di Liberto, Giovanni M.
Bednar, Adam
Lalor, Edmund C.
The Multivariate Temporal Response Function (mTRF) Toolbox: A MATLAB Toolbox for Relating Neural Signals to Continuous Stimuli
title The Multivariate Temporal Response Function (mTRF) Toolbox: A MATLAB Toolbox for Relating Neural Signals to Continuous Stimuli
title_full The Multivariate Temporal Response Function (mTRF) Toolbox: A MATLAB Toolbox for Relating Neural Signals to Continuous Stimuli
title_fullStr The Multivariate Temporal Response Function (mTRF) Toolbox: A MATLAB Toolbox for Relating Neural Signals to Continuous Stimuli
title_full_unstemmed The Multivariate Temporal Response Function (mTRF) Toolbox: A MATLAB Toolbox for Relating Neural Signals to Continuous Stimuli
title_short The Multivariate Temporal Response Function (mTRF) Toolbox: A MATLAB Toolbox for Relating Neural Signals to Continuous Stimuli
title_sort multivariate temporal response function (mtrf) toolbox: a matlab toolbox for relating neural signals to continuous stimuli
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5127806/
https://www.ncbi.nlm.nih.gov/pubmed/27965557
http://dx.doi.org/10.3389/fnhum.2016.00604
work_keys_str_mv AT crossemichaelj themultivariatetemporalresponsefunctionmtrftoolboxamatlabtoolboxforrelatingneuralsignalstocontinuousstimuli
AT dilibertogiovannim themultivariatetemporalresponsefunctionmtrftoolboxamatlabtoolboxforrelatingneuralsignalstocontinuousstimuli
AT bednaradam themultivariatetemporalresponsefunctionmtrftoolboxamatlabtoolboxforrelatingneuralsignalstocontinuousstimuli
AT laloredmundc themultivariatetemporalresponsefunctionmtrftoolboxamatlabtoolboxforrelatingneuralsignalstocontinuousstimuli
AT crossemichaelj multivariatetemporalresponsefunctionmtrftoolboxamatlabtoolboxforrelatingneuralsignalstocontinuousstimuli
AT dilibertogiovannim multivariatetemporalresponsefunctionmtrftoolboxamatlabtoolboxforrelatingneuralsignalstocontinuousstimuli
AT bednaradam multivariatetemporalresponsefunctionmtrftoolboxamatlabtoolboxforrelatingneuralsignalstocontinuousstimuli
AT laloredmundc multivariatetemporalresponsefunctionmtrftoolboxamatlabtoolboxforrelatingneuralsignalstocontinuousstimuli