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Automatic software correction of residual aberrations in reconstructed HRTEM exit waves of crystalline samples

We develop an automatic and objective method to measure and correct residual aberrations in atomic-resolution HRTEM complex exit waves for crystalline samples aligned along a low-index zone axis. Our method uses the approximate rotational point symmetry of a column of atoms or single atom to iterati...

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Autores principales: Ophus, Colin, Rasool, Haider I, Linck, Martin, Zettl, Alex, Ciston, Jim
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5127900/
https://www.ncbi.nlm.nih.gov/pubmed/28003952
http://dx.doi.org/10.1186/s40679-016-0030-1
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author Ophus, Colin
Rasool, Haider I
Linck, Martin
Zettl, Alex
Ciston, Jim
author_facet Ophus, Colin
Rasool, Haider I
Linck, Martin
Zettl, Alex
Ciston, Jim
author_sort Ophus, Colin
collection PubMed
description We develop an automatic and objective method to measure and correct residual aberrations in atomic-resolution HRTEM complex exit waves for crystalline samples aligned along a low-index zone axis. Our method uses the approximate rotational point symmetry of a column of atoms or single atom to iteratively calculate a best-fit numerical phase plate for this symmetry condition, and does not require information about the sample thickness or precise structure. We apply our method to two experimental focal series reconstructions, imaging a β-Si(3)N(4) wedge with O and N doping, and a single-layer graphene grain boundary. We use peak and lattice fitting to evaluate the precision of the corrected exit waves. We also apply our method to the exit wave of a Si wedge retrieved by off-axis electron holography. In all cases, the software correction of the residual aberration function improves the accuracy of the measured exit waves.
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spelling pubmed-51279002016-12-19 Automatic software correction of residual aberrations in reconstructed HRTEM exit waves of crystalline samples Ophus, Colin Rasool, Haider I Linck, Martin Zettl, Alex Ciston, Jim Adv Struct Chem Imaging Research We develop an automatic and objective method to measure and correct residual aberrations in atomic-resolution HRTEM complex exit waves for crystalline samples aligned along a low-index zone axis. Our method uses the approximate rotational point symmetry of a column of atoms or single atom to iteratively calculate a best-fit numerical phase plate for this symmetry condition, and does not require information about the sample thickness or precise structure. We apply our method to two experimental focal series reconstructions, imaging a β-Si(3)N(4) wedge with O and N doping, and a single-layer graphene grain boundary. We use peak and lattice fitting to evaluate the precision of the corrected exit waves. We also apply our method to the exit wave of a Si wedge retrieved by off-axis electron holography. In all cases, the software correction of the residual aberration function improves the accuracy of the measured exit waves. Springer International Publishing 2016-11-30 2017 /pmc/articles/PMC5127900/ /pubmed/28003952 http://dx.doi.org/10.1186/s40679-016-0030-1 Text en © The Author(s) 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Research
Ophus, Colin
Rasool, Haider I
Linck, Martin
Zettl, Alex
Ciston, Jim
Automatic software correction of residual aberrations in reconstructed HRTEM exit waves of crystalline samples
title Automatic software correction of residual aberrations in reconstructed HRTEM exit waves of crystalline samples
title_full Automatic software correction of residual aberrations in reconstructed HRTEM exit waves of crystalline samples
title_fullStr Automatic software correction of residual aberrations in reconstructed HRTEM exit waves of crystalline samples
title_full_unstemmed Automatic software correction of residual aberrations in reconstructed HRTEM exit waves of crystalline samples
title_short Automatic software correction of residual aberrations in reconstructed HRTEM exit waves of crystalline samples
title_sort automatic software correction of residual aberrations in reconstructed hrtem exit waves of crystalline samples
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5127900/
https://www.ncbi.nlm.nih.gov/pubmed/28003952
http://dx.doi.org/10.1186/s40679-016-0030-1
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