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Automatic software correction of residual aberrations in reconstructed HRTEM exit waves of crystalline samples
We develop an automatic and objective method to measure and correct residual aberrations in atomic-resolution HRTEM complex exit waves for crystalline samples aligned along a low-index zone axis. Our method uses the approximate rotational point symmetry of a column of atoms or single atom to iterati...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5127900/ https://www.ncbi.nlm.nih.gov/pubmed/28003952 http://dx.doi.org/10.1186/s40679-016-0030-1 |
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author | Ophus, Colin Rasool, Haider I Linck, Martin Zettl, Alex Ciston, Jim |
author_facet | Ophus, Colin Rasool, Haider I Linck, Martin Zettl, Alex Ciston, Jim |
author_sort | Ophus, Colin |
collection | PubMed |
description | We develop an automatic and objective method to measure and correct residual aberrations in atomic-resolution HRTEM complex exit waves for crystalline samples aligned along a low-index zone axis. Our method uses the approximate rotational point symmetry of a column of atoms or single atom to iteratively calculate a best-fit numerical phase plate for this symmetry condition, and does not require information about the sample thickness or precise structure. We apply our method to two experimental focal series reconstructions, imaging a β-Si(3)N(4) wedge with O and N doping, and a single-layer graphene grain boundary. We use peak and lattice fitting to evaluate the precision of the corrected exit waves. We also apply our method to the exit wave of a Si wedge retrieved by off-axis electron holography. In all cases, the software correction of the residual aberration function improves the accuracy of the measured exit waves. |
format | Online Article Text |
id | pubmed-5127900 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-51279002016-12-19 Automatic software correction of residual aberrations in reconstructed HRTEM exit waves of crystalline samples Ophus, Colin Rasool, Haider I Linck, Martin Zettl, Alex Ciston, Jim Adv Struct Chem Imaging Research We develop an automatic and objective method to measure and correct residual aberrations in atomic-resolution HRTEM complex exit waves for crystalline samples aligned along a low-index zone axis. Our method uses the approximate rotational point symmetry of a column of atoms or single atom to iteratively calculate a best-fit numerical phase plate for this symmetry condition, and does not require information about the sample thickness or precise structure. We apply our method to two experimental focal series reconstructions, imaging a β-Si(3)N(4) wedge with O and N doping, and a single-layer graphene grain boundary. We use peak and lattice fitting to evaluate the precision of the corrected exit waves. We also apply our method to the exit wave of a Si wedge retrieved by off-axis electron holography. In all cases, the software correction of the residual aberration function improves the accuracy of the measured exit waves. Springer International Publishing 2016-11-30 2017 /pmc/articles/PMC5127900/ /pubmed/28003952 http://dx.doi.org/10.1186/s40679-016-0030-1 Text en © The Author(s) 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Research Ophus, Colin Rasool, Haider I Linck, Martin Zettl, Alex Ciston, Jim Automatic software correction of residual aberrations in reconstructed HRTEM exit waves of crystalline samples |
title | Automatic software correction of residual aberrations in reconstructed HRTEM exit waves of crystalline samples |
title_full | Automatic software correction of residual aberrations in reconstructed HRTEM exit waves of crystalline samples |
title_fullStr | Automatic software correction of residual aberrations in reconstructed HRTEM exit waves of crystalline samples |
title_full_unstemmed | Automatic software correction of residual aberrations in reconstructed HRTEM exit waves of crystalline samples |
title_short | Automatic software correction of residual aberrations in reconstructed HRTEM exit waves of crystalline samples |
title_sort | automatic software correction of residual aberrations in reconstructed hrtem exit waves of crystalline samples |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5127900/ https://www.ncbi.nlm.nih.gov/pubmed/28003952 http://dx.doi.org/10.1186/s40679-016-0030-1 |
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