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Sparsity-based multi-height phase recovery in holographic microscopy

High-resolution imaging of densely connected samples such as pathology slides using digital in-line holographic microscopy requires the acquisition of several holograms, e.g., at >6–8 different sample-to-sensor distances, to achieve robust phase recovery and coherent imaging of specimen. Reducing...

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Autores principales: Rivenson, Yair, Wu, Yichen, Wang, Hongda, Zhang, Yibo, Feizi, Alborz, Ozcan, Aydogan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5129015/
https://www.ncbi.nlm.nih.gov/pubmed/27901048
http://dx.doi.org/10.1038/srep37862
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author Rivenson, Yair
Wu, Yichen
Wang, Hongda
Zhang, Yibo
Feizi, Alborz
Ozcan, Aydogan
author_facet Rivenson, Yair
Wu, Yichen
Wang, Hongda
Zhang, Yibo
Feizi, Alborz
Ozcan, Aydogan
author_sort Rivenson, Yair
collection PubMed
description High-resolution imaging of densely connected samples such as pathology slides using digital in-line holographic microscopy requires the acquisition of several holograms, e.g., at >6–8 different sample-to-sensor distances, to achieve robust phase recovery and coherent imaging of specimen. Reducing the number of these holographic measurements would normally result in reconstruction artifacts and loss of image quality, which would be detrimental especially for biomedical and diagnostics-related applications. Inspired by the fact that most natural images are sparse in some domain, here we introduce a sparsity-based phase reconstruction technique implemented in wavelet domain to achieve at least 2-fold reduction in the number of holographic measurements for coherent imaging of densely connected samples with minimal impact on the reconstructed image quality, quantified using a structural similarity index. We demonstrated the success of this approach by imaging Papanicolaou smears and breast cancer tissue slides over a large field-of-view of ~20 mm(2) using 2 in-line holograms that are acquired at different sample-to-sensor distances and processed using sparsity-based multi-height phase recovery. This new phase recovery approach that makes use of sparsity can also be extended to other coherent imaging schemes, involving e.g., multiple illumination angles or wavelengths to increase the throughput and speed of coherent imaging.
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spelling pubmed-51290152016-12-15 Sparsity-based multi-height phase recovery in holographic microscopy Rivenson, Yair Wu, Yichen Wang, Hongda Zhang, Yibo Feizi, Alborz Ozcan, Aydogan Sci Rep Article High-resolution imaging of densely connected samples such as pathology slides using digital in-line holographic microscopy requires the acquisition of several holograms, e.g., at >6–8 different sample-to-sensor distances, to achieve robust phase recovery and coherent imaging of specimen. Reducing the number of these holographic measurements would normally result in reconstruction artifacts and loss of image quality, which would be detrimental especially for biomedical and diagnostics-related applications. Inspired by the fact that most natural images are sparse in some domain, here we introduce a sparsity-based phase reconstruction technique implemented in wavelet domain to achieve at least 2-fold reduction in the number of holographic measurements for coherent imaging of densely connected samples with minimal impact on the reconstructed image quality, quantified using a structural similarity index. We demonstrated the success of this approach by imaging Papanicolaou smears and breast cancer tissue slides over a large field-of-view of ~20 mm(2) using 2 in-line holograms that are acquired at different sample-to-sensor distances and processed using sparsity-based multi-height phase recovery. This new phase recovery approach that makes use of sparsity can also be extended to other coherent imaging schemes, involving e.g., multiple illumination angles or wavelengths to increase the throughput and speed of coherent imaging. Nature Publishing Group 2016-11-30 /pmc/articles/PMC5129015/ /pubmed/27901048 http://dx.doi.org/10.1038/srep37862 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Rivenson, Yair
Wu, Yichen
Wang, Hongda
Zhang, Yibo
Feizi, Alborz
Ozcan, Aydogan
Sparsity-based multi-height phase recovery in holographic microscopy
title Sparsity-based multi-height phase recovery in holographic microscopy
title_full Sparsity-based multi-height phase recovery in holographic microscopy
title_fullStr Sparsity-based multi-height phase recovery in holographic microscopy
title_full_unstemmed Sparsity-based multi-height phase recovery in holographic microscopy
title_short Sparsity-based multi-height phase recovery in holographic microscopy
title_sort sparsity-based multi-height phase recovery in holographic microscopy
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5129015/
https://www.ncbi.nlm.nih.gov/pubmed/27901048
http://dx.doi.org/10.1038/srep37862
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