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Systematic Analysis of Protein Interaction Network Associated with Azoospermia

Non-obstructive azoospermia is a severe infertility factor. Currently, the etiology of this condition remains elusive with several possible molecular pathway disruptions identified in the post-meiotic spermatozoa. In the presented study, in order to identify all possible candidate genes associated w...

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Autores principales: Sabetian, Soudabeh, Shamsir, Mohd Shahir
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5133857/
https://www.ncbi.nlm.nih.gov/pubmed/27834916
http://dx.doi.org/10.3390/ijms17111857
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author Sabetian, Soudabeh
Shamsir, Mohd Shahir
author_facet Sabetian, Soudabeh
Shamsir, Mohd Shahir
author_sort Sabetian, Soudabeh
collection PubMed
description Non-obstructive azoospermia is a severe infertility factor. Currently, the etiology of this condition remains elusive with several possible molecular pathway disruptions identified in the post-meiotic spermatozoa. In the presented study, in order to identify all possible candidate genes associated with azoospermia and to map their relationship, we present the first protein-protein interaction network related to azoospermia and analyze the complex effects of the related genes systematically. Using Online Mendelian Inheritance in Man, the Human Protein Reference Database and Cytoscape, we created a novel network consisting of 209 protein nodes and 737 interactions. Mathematical analysis identified three proteins, ar, dazap2, and esr1, as hub nodes and a bottleneck protein within the network. We also identified new candidate genes, CREBBP and BCAR1, which may play a role in azoospermia. The gene ontology analysis suggests a genetic link between azoospermia and liver disease. The KEGG analysis also showed 45 statistically important pathways with 31 proteins associated with colorectal, pancreatic, chronic myeloid leukemia and prostate cancer. Two new genes and associated diseases are promising for further experimental validation.
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spelling pubmed-51338572016-12-12 Systematic Analysis of Protein Interaction Network Associated with Azoospermia Sabetian, Soudabeh Shamsir, Mohd Shahir Int J Mol Sci Article Non-obstructive azoospermia is a severe infertility factor. Currently, the etiology of this condition remains elusive with several possible molecular pathway disruptions identified in the post-meiotic spermatozoa. In the presented study, in order to identify all possible candidate genes associated with azoospermia and to map their relationship, we present the first protein-protein interaction network related to azoospermia and analyze the complex effects of the related genes systematically. Using Online Mendelian Inheritance in Man, the Human Protein Reference Database and Cytoscape, we created a novel network consisting of 209 protein nodes and 737 interactions. Mathematical analysis identified three proteins, ar, dazap2, and esr1, as hub nodes and a bottleneck protein within the network. We also identified new candidate genes, CREBBP and BCAR1, which may play a role in azoospermia. The gene ontology analysis suggests a genetic link between azoospermia and liver disease. The KEGG analysis also showed 45 statistically important pathways with 31 proteins associated with colorectal, pancreatic, chronic myeloid leukemia and prostate cancer. Two new genes and associated diseases are promising for further experimental validation. MDPI 2016-11-10 /pmc/articles/PMC5133857/ /pubmed/27834916 http://dx.doi.org/10.3390/ijms17111857 Text en © 2016 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC-BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Sabetian, Soudabeh
Shamsir, Mohd Shahir
Systematic Analysis of Protein Interaction Network Associated with Azoospermia
title Systematic Analysis of Protein Interaction Network Associated with Azoospermia
title_full Systematic Analysis of Protein Interaction Network Associated with Azoospermia
title_fullStr Systematic Analysis of Protein Interaction Network Associated with Azoospermia
title_full_unstemmed Systematic Analysis of Protein Interaction Network Associated with Azoospermia
title_short Systematic Analysis of Protein Interaction Network Associated with Azoospermia
title_sort systematic analysis of protein interaction network associated with azoospermia
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5133857/
https://www.ncbi.nlm.nih.gov/pubmed/27834916
http://dx.doi.org/10.3390/ijms17111857
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