Cargando…

Genomic prediction using preselected DNA variants from a GWAS with whole-genome sequence data in Holstein–Friesian cattle

BACKGROUND: Whole-genome sequence data is expected to capture genetic variation more completely than common genotyping panels. Our objective was to compare the proportion of variance explained and the accuracy of genomic prediction by using imputed sequence data or preselected SNPs from a genome-wid...

Descripción completa

Detalles Bibliográficos
Autores principales:	Veerkamp, Roel F., Bouwman, Aniek C., Schrooten, Chris, Calus, Mario P. L.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2016
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5134274/ https://www.ncbi.nlm.nih.gov/pubmed/27905878 http://dx.doi.org/10.1186/s12711-016-0274-1

Ejemplares similares

Genomic prediction using imputed whole-genome sequence data in Holstein Friesian cattle
por: van Binsbergen, Rianne, et al.
Publicado: (2015)

Accuracy of imputation to whole-genome sequence data in Holstein Friesian cattle
por: van Binsbergen, Rianne, et al.
Publicado: (2014)

Selection and Drift: A Comparison between Historic and Recent Dutch Friesian Cattle and Recent Holstein Friesian Using WGS Data
por: Hulsegge, Ina, et al.
Publicado: (2022)

Efficient genomic prediction based on whole-genome sequence data using split-and-merge Bayesian variable selection
por: Calus, Mario P. L., et al.
Publicado: (2016)

Avoiding preselection bias in subsequent single‐step genomic BLUP evaluations of genomically preselected animals
por: Jibrila, Ibrahim, et al.
Publicado: (2020)

Investigating the impact of preselection on subsequent single-step genomic BLUP evaluation of preselected animals
por: Jibrila, Ibrahim, et al.
Publicado: (2020)

Inbreeding depression across the genome of Dutch Holstein Friesian dairy cattle
por: Doekes, Harmen P., et al.
Publicado: (2020)

Utility of whole-genome sequence data for across-breed genomic prediction
por: Raymond, Biaty, et al.
Publicado: (2018)

Genomic prediction of breeding values using previously estimated SNP variances
por: Calus, Mario PL, et al.
Publicado: (2014)

Impact of genomic preselection on subsequent genetic evaluations with ssGBLUP using real data from pigs
por: Jibrila, Ibrahim, et al.
Publicado: (2022)

A deterministic equation to predict the accuracy of multi-population genomic prediction with multiple genomic relationship matrices
por: Raymond, Biaty, et al.
Publicado: (2020)

Inbreeding depression due to recent and ancient inbreeding in Dutch Holstein–Friesian dairy cattle
por: Doekes, Harmen P., et al.
Publicado: (2019)

Consequences of splitting whole-genome sequencing effort over multiple breeds on imputation accuracy
por: Bouwman, Aniek C, et al.
Publicado: (2014)

Imputation of non-genotyped individuals based on genotyped relatives: assessing the imputation accuracy of a real case scenario in dairy cattle
por: Bouwman, Aniek C, et al.
Publicado: (2014)

Mapping QTL influencing gastrointestinal nematode burden in Dutch Holstein-Friesian dairy cattle
por: Coppieters, Wouter, et al.
Publicado: (2009)

Fitting and validating the genomic evaluation model to Polish Holstein-Friesian cattle
por: Szyda, Joanna, et al.
Publicado: (2011)

Genomic regions underlying susceptibility to bovine tuberculosis in Holstein-Friesian cattle
por: Raphaka, Kethusegile, et al.
Publicado: (2017)

Genomic prediction for numerically small breeds, using models with pre-selected and differentially weighted markers
por: Raymond, Biaty, et al.
Publicado: (2018)

Trends in genome-wide and region-specific genetic diversity in the Dutch-Flemish Holstein–Friesian breeding program from 1986 to 2015
por: Doekes, Harmen P., et al.
Publicado: (2018)

Empirical and deterministic accuracies of across-population genomic prediction
por: Wientjes, Yvonne CJ, et al.
Publicado: (2015)

Mycobacterium bovis Infection in Holstein Friesian Cattle, Iran
por: Tadayon, Keyvan, et al.
Publicado: (2008)

A new Robertsonian translocation in Holstein-Friesian cattle
por: Pinton, A, et al.
Publicado: (1997)

Minimal Erythema Dose Determination in Holstein Friesian Cattle
por: Hodnik, Jaka Jakob, et al.
Publicado: (2021)

Whole genome association study identifies regions of the bovine genome and biological pathways involved in carcass trait performance in Holstein-Friesian cattle
por: Doran, Anthony G, et al.
Publicado: (2014)

Genome-wide associations for milk production and somatic cell score in Holstein-Friesian cattle in Ireland
por: Meredith, Brian K, et al.
Publicado: (2012)

A Genome Wide Association Scan of Bovine Tuberculosis Susceptibility in Holstein-Friesian Dairy Cattle
por: Finlay, Emma K., et al.
Publicado: (2012)

Linkage disequilibrium on chromosome 6 in Australian Holstein-Friesian cattle
por: Khatkar, Mehar S, et al.
Publicado: (2006)

Genetic Association Analysis of Paratuberculosis Forms in Holstein-Friesian Cattle
por: Vázquez, Patricia, et al.
Publicado: (2014)

Differential macrophage function in Brown Swiss and Holstein Friesian cattle
por: Gibson, Amanda Jane, et al.
Publicado: (2016)

Using prior information from humans to prioritize genes and gene-associated variants for complex traits in livestock
por: Raymond, Biaty, et al.
Publicado: (2020)

Imputation to whole-genome sequence using multiple pig populations and its use in genome-wide association studies
por: van den Berg, Sanne, et al.
Publicado: (2019)

A genome-wide association study reveals a locus for bilateral iridal hypopigmentation in Holstein Friesian cattle
por: Hollmann, Anne K., et al.
Publicado: (2017)

Accuracy of multi-trait genomic selection using different methods
por: Calus, Mario PL, et al.
Publicado: (2011)

Expression of X chromosome fragility in Holstein-Friesian cattle: a preliminary study
por: Rincón, G, et al.
Publicado: (1997)

The Polymorphism in Various Milk Protein Genes in Polish Holstein-Friesian Dairy Cattle
por: Kolenda, Magdalena, et al.
Publicado: (2021)

Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panel
por: Khatkar, Mehar S, et al.
Publicado: (2008)

Application of neural networks with back-propagation to genome-enabled prediction of complex traits in Holstein-Friesian and German Fleckvieh cattle
por: Ehret, Anita, et al.
Publicado: (2015)

Effects of preselection of genotyped animals on reliability and bias of genomic prediction in dairy cattle
por: Togashi, Kenji, et al.
Publicado: (2019)

Effects of the number of markers per haplotype and clustering of haplotypes on the accuracy of QTL mapping and prediction of genomic breeding values
por: Calus, Mario PL, et al.
Publicado: (2009)

Additive genetic, heterosis and maternal effects on production traits in a crossing experiment between Dutch Friesian and Holstein Friesian cattle
por: Oldenbroek, JK
Publicado: (1980)

Cannot write session to /tmp/vufind_sessions/sess_avf0jhlsfkst14pvfgud29bcjn