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Improved tomographic reconstruction of large-scale real-world data by filter optimization
In advanced tomographic experiments, large detector sizes and large numbers of acquired datasets can make it difficult to process the data in a reasonable time. At the same time, the acquired projections are often limited in some way, for example having a low number of projections or a low signal-to...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5135727/ https://www.ncbi.nlm.nih.gov/pubmed/28003954 http://dx.doi.org/10.1186/s40679-016-0033-y |
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author | Pelt, Daniël M. De Andrade, Vincent |
author_facet | Pelt, Daniël M. De Andrade, Vincent |
author_sort | Pelt, Daniël M. |
collection | PubMed |
description | In advanced tomographic experiments, large detector sizes and large numbers of acquired datasets can make it difficult to process the data in a reasonable time. At the same time, the acquired projections are often limited in some way, for example having a low number of projections or a low signal-to-noise ratio. Direct analytical reconstruction methods are able to produce reconstructions in very little time, even for large-scale data, but the quality of these reconstructions can be insufficient for further analysis in cases with limited data. Iterative reconstruction methods typically produce more accurate reconstructions, but take significantly more time to compute, which limits their usefulness in practice. In this paper, we present the application of the SIRT-FBP method to large-scale real-world tomographic data. The SIRT-FBP method is able to accurately approximate the simultaneous iterative reconstruction technique (SIRT) method by the computationally efficient filtered backprojection (FBP) method, using precomputed experiment-specific filters. We specifically focus on the many implementation details that are important for application on large-scale real-world data, and give solutions to common problems that occur with experimental data. We show that SIRT-FBP filters can be computed in reasonable time, even for large problem sizes, and that precomputed filters can be reused for future experiments. Reconstruction results are given for three different experiments, and are compared with results of popular existing methods. The results show that the SIRT-FBP method is able to accurately approximate iterative reconstructions of experimental data. Furthermore, they show that, in practice, the SIRT-FBP method can produce more accurate reconstructions than standard direct analytical reconstructions with popular filters, without increasing the required computation time. |
format | Online Article Text |
id | pubmed-5135727 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-51357272016-12-19 Improved tomographic reconstruction of large-scale real-world data by filter optimization Pelt, Daniël M. De Andrade, Vincent Adv Struct Chem Imaging Research In advanced tomographic experiments, large detector sizes and large numbers of acquired datasets can make it difficult to process the data in a reasonable time. At the same time, the acquired projections are often limited in some way, for example having a low number of projections or a low signal-to-noise ratio. Direct analytical reconstruction methods are able to produce reconstructions in very little time, even for large-scale data, but the quality of these reconstructions can be insufficient for further analysis in cases with limited data. Iterative reconstruction methods typically produce more accurate reconstructions, but take significantly more time to compute, which limits their usefulness in practice. In this paper, we present the application of the SIRT-FBP method to large-scale real-world tomographic data. The SIRT-FBP method is able to accurately approximate the simultaneous iterative reconstruction technique (SIRT) method by the computationally efficient filtered backprojection (FBP) method, using precomputed experiment-specific filters. We specifically focus on the many implementation details that are important for application on large-scale real-world data, and give solutions to common problems that occur with experimental data. We show that SIRT-FBP filters can be computed in reasonable time, even for large problem sizes, and that precomputed filters can be reused for future experiments. Reconstruction results are given for three different experiments, and are compared with results of popular existing methods. The results show that the SIRT-FBP method is able to accurately approximate iterative reconstructions of experimental data. Furthermore, they show that, in practice, the SIRT-FBP method can produce more accurate reconstructions than standard direct analytical reconstructions with popular filters, without increasing the required computation time. Springer International Publishing 2016-12-03 2017 /pmc/articles/PMC5135727/ /pubmed/28003954 http://dx.doi.org/10.1186/s40679-016-0033-y Text en © The Author(s) 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Research Pelt, Daniël M. De Andrade, Vincent Improved tomographic reconstruction of large-scale real-world data by filter optimization |
title | Improved tomographic reconstruction of large-scale real-world data by filter optimization |
title_full | Improved tomographic reconstruction of large-scale real-world data by filter optimization |
title_fullStr | Improved tomographic reconstruction of large-scale real-world data by filter optimization |
title_full_unstemmed | Improved tomographic reconstruction of large-scale real-world data by filter optimization |
title_short | Improved tomographic reconstruction of large-scale real-world data by filter optimization |
title_sort | improved tomographic reconstruction of large-scale real-world data by filter optimization |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5135727/ https://www.ncbi.nlm.nih.gov/pubmed/28003954 http://dx.doi.org/10.1186/s40679-016-0033-y |
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